Detail information of GWHGAAZE008045


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010065667.11.38754E-73PREDICTED: B3 domain-containing protein REM13-like isoform X1 [Eucalyptus grandis]
Swissprottr|Q9XIB5|REM19_ARATH5E-17B3 domain-containing protein REM19
trEMBLtr|A0A059BBI7|A0A059BBI7_EUCGR3E-73Uncharacterized protein {ECO:0000313|EMBL:KCW63266.1}
TAIR10AT3G18990.11E-15AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6007498860088314-
GWHAAZE00000002mRNA6007498860088314-
GWHAAZE00000002exon6007498860075388-
GWHAAZE00000002exon6007780460077907-
GWHAAZE00000002exon6007827260078506-
GWHAAZE00000002exon6008005260080203-
GWHAAZE00000002exon6008071060081010-
GWHAAZE00000002exon6008198260082142-
GWHAAZE00000002exon6008614060086440-
GWHAAZE00000002exon6008687060087030-
GWHAAZE00000002exon6008815860088314-
GWHAAZE00000002CDS6008815860088314-
GWHAAZE00000002CDS6008687060087030-
GWHAAZE00000002CDS6008614060086440-
GWHAAZE00000002CDS6008198260082142-
GWHAAZE00000002CDS6008071060081010-
GWHAAZE00000002CDS6008005260080203-
GWHAAZE00000002CDS6007827260078506-
GWHAAZE00000002CDS6007780460077907-
GWHAAZE00000002CDS6007512260075388-
GWHAAZE00000002three_prime_UTR6007498860075121-
Transcript Sequence

Network for GWHGAAZE008045

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0043


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3921838.60E-16
PF02362.22B32473381.70E-17
PF02362.22B34094884.80E-13
PF02362.22B35156025.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.300
SRR3591706second leaf0.376
SRR3591707mature leaf0.768
SRR3591708Shoot apex0.403
SRR3591709Stem0.305
SRR3591710White floral bud2.554
SRR3591711White flower0.000
SRR3591712Green floral bud4.632
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.940
SRR8316896Juvenile bud stage 1.716
SRR8316897Juvenile bud stage 0.407
SRR8316894Third green stage 1.207
SRR8316900Third green stage 9.152
SRR8316901Third green stage 5.490
SRR8316898Complete white stage 2.001
SRR8316899Complete white stage 11.323
SRR8316903Complete white stage 2.824
SRR8316902Silver flowering stage0.069
SRR8316904Silver flowering stage0.157
SRR8316905Silver flowering stage0.035
SRR8316906Gold flowering stage 0.098
SRR8316907Gold flowering stage 0.036
SRR8316908Gold flowering stage 0.026
SRP132670SRR6706286Control3.028
SRR6706287Light intensity 50%3.241
SRR6706288Light intensity 20%4.186
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.918
CNS0095593Slightly white alabastrum(diploid) 24.208
CNS0095594Slightly white alabastrum(diploid) 31.707
CNS0095595Whole white alabastrum(diploid) 26.157
CNS0095596Whole white alabastrum(diploid) 37.809
CNS0095597Whole white alabastrum(diploid) 46.740
CNS0095598Silvery flower (diploied) 10.564
CNS0095599Silvery flower (diploied) 20.402
CNS0095600Silvery flower (diploied) 30.395
CNS0095601Golden flower (diploid) 10.453
CNS0095602Golden flower (diploid) 20.248
CNS0095603Golden flower (diploid) 30.196
CNS0095604Slightly white alabastrum(tetraploid) 11.298
CNS0095605Slightly white alabastrum(tetraploid) 20.648
CNS0095606Slightly white alabastrum(tetraploid) 31.566
CNS0095607Whole white alabastrum(tetraploid) 10.914
CNS0095608Whole white alabastrum(tetraploid) 20.657
CNS0095609Whole white alabastrum(tetraploid) 31.852
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.032
CRA001975CRR073297Stem 11.478
CRR073298Stem 22.557
CRR073299Stem 31.246
CRR073300Leaf 16.533
CRR073301Leaf 24.262
CRR073302Leaf 36.159
CRR073303Juvenile bud 15.933
CRR073304Juvenile bud 22.821
CRR073305Juvenile bud 34.655
CRR073306Third green 10.072
CRR073307Third green 20.220
CRR073308Third green 30.238
CRR073309Second white 10.020
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.182
CRR073316Gold flowering 20.136
CRR073317Gold flowering 30.147
CRR073318Tawny withering 11.145
CRR073319Tawny withering 20.694
CRR073320Tawny withering 30.417