Detail information of GWHGAAZE008047


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010065668.11.38277E-69PREDICTED: B3 domain-containing protein REM13-like isoform X2 [Eucalyptus grandis]
Swissprottr|Q9FGD2|Y5698_ARATH6E-23Putative B3 domain-containing protein At5g66980
trEMBLtr|A0A059BBI7|A0A059BBI7_EUCGR2E-68Uncharacterized protein {ECO:0000313|EMBL:KCW63266.1}
TAIR10AT5G66980.13E-21AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6014835660156556-
GWHAAZE00000002mRNA6014835660156556-
GWHAAZE00000002exon6015646460156556-
GWHAAZE00000002exon6015467960154997-
GWHAAZE00000002exon6015399760154142-
GWHAAZE00000002exon6015274760153044-
GWHAAZE00000002exon6015196260152098-
GWHAAZE00000002exon6015079860151059-
GWHAAZE00000002exon6015015660150262-
GWHAAZE00000002exon6014835660148622-
GWHAAZE00000002CDS6015646460156556-
GWHAAZE00000002CDS6015467960154997-
GWHAAZE00000002CDS6015399760154142-
GWHAAZE00000002CDS6015274760153044-
GWHAAZE00000002CDS6015196260152098-
GWHAAZE00000002CDS6015079860151059-
GWHAAZE00000002CDS6015015660150262-
GWHAAZE00000002CDS6014835660148622-
Transcript Sequence

Network for GWHGAAZE008047

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3181084.90E-15
PF02362.22B31722645.10E-15
PF02362.22B33174082.00E-14
PF02362.22B34415284.80E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.388
SRR3591706second leaf1.438
SRR3591707mature leaf2.206
SRR3591708Shoot apex1.673
SRR3591709Stem0.000
SRR3591710White floral bud0.509
SRR3591711White flower0.648
SRR3591712Green floral bud0.959
SRR3591713Yellow flower0.357
SRP173429 SRR8316895Juvenile bud stage 2.900
SRR8316896Juvenile bud stage 5.761
SRR8316897Juvenile bud stage 1.973
SRR8316894Third green stage 2.408
SRR8316900Third green stage 2.281
SRR8316901Third green stage 1.548
SRR8316898Complete white stage 0.231
SRR8316899Complete white stage 1.646
SRR8316903Complete white stage 0.274
SRR8316902Silver flowering stage0.065
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.013
SRR8316906Gold flowering stage 0.047
SRR8316907Gold flowering stage 0.186
SRR8316908Gold flowering stage 0.014
SRP132670SRR6706286Control1.312
SRR6706287Light intensity 50%1.370
SRR6706288Light intensity 20%1.198
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.092
CNS0095593Slightly white alabastrum(diploid) 21.905
CNS0095594Slightly white alabastrum(diploid) 32.504
CNS0095595Whole white alabastrum(diploid) 20.701
CNS0095596Whole white alabastrum(diploid) 31.164
CNS0095597Whole white alabastrum(diploid) 41.230
CNS0095598Silvery flower (diploied) 10.791
CNS0095599Silvery flower (diploied) 21.309
CNS0095600Silvery flower (diploied) 30.123
CNS0095601Golden flower (diploid) 10.812
CNS0095602Golden flower (diploid) 20.347
CNS0095603Golden flower (diploid) 30.292
CNS0095604Slightly white alabastrum(tetraploid) 12.825
CNS0095605Slightly white alabastrum(tetraploid) 21.971
CNS0095606Slightly white alabastrum(tetraploid) 32.112
CNS0095607Whole white alabastrum(tetraploid) 11.777
CNS0095608Whole white alabastrum(tetraploid) 20.432
CNS0095609Whole white alabastrum(tetraploid) 32.071
CNS0095610Silvery flower (tetraploid) 10.478
CNS0095611Silvery flower (tetraploid) 20.519
CNS0095612Silvery flower (tetraploid) 30.982
CNS0095613Golden flower (tetraploid) 10.243
CNS0095614Golden flower (tetraploid) 20.337
CNS0095615Golden flower (tetraploid) 30.020
CRA001975CRR073297Stem 13.834
CRR073298Stem 22.951
CRR073299Stem 30.410
CRR073300Leaf 11.366
CRR073301Leaf 21.483
CRR073302Leaf 30.200
CRR073303Juvenile bud 10.158
CRR073304Juvenile bud 20.023
CRR073305Juvenile bud 30.184
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.058
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.068
CRR073316Gold flowering 20.114
CRR073317Gold flowering 30.330
CRR073318Tawny withering 10.031
CRR073319Tawny withering 20.170
CRR073320Tawny withering 30.241