Detail information of GWHGAAZE008049


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006432424.19.02083E-35hypothetical protein CICLE_v10002826mg [Citrus clementina]
Swissprottr|Q9LHI0|NDUA6_ARATH2E-32NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
trEMBLtr|V4V1M5|V4V1M5_9ROSI3E-35Uncharacterized protein {ECO:0000313|EMBL:ESR45664.1}
TAIR10AT3G12260.12E-26LYR family of Fe/S cluster biogenesis protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6023040560237696-
GWHAAZE00000002mRNA6023040560237696-
GWHAAZE00000002exon6023040560230757-
GWHAAZE00000002exon6023498760235019-
GWHAAZE00000002exon6023546260235495-
GWHAAZE00000002exon6023742860237696-
GWHAAZE00000002five_prime_UTR6023764160237696-
GWHAAZE00000002CDS6023742860237640-
GWHAAZE00000002CDS6023546260235495-
GWHAAZE00000002CDS6023498760235019-
GWHAAZE00000002CDS6023060660230757-
GWHAAZE00000002three_prime_UTR6023040560230605-
Transcript Sequence

Network for GWHGAAZE008049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03950NDUFA6 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf75.496
SRR3591706second leaf36.235
SRR3591707mature leaf34.662
SRR3591708Shoot apex54.351
SRR3591709Stem56.131
SRR3591710White floral bud59.433
SRR3591711White flower87.074
SRR3591712Green floral bud96.740
SRR3591713Yellow flower75.031
SRP173429 SRR8316895Juvenile bud stage 65.491
SRR8316896Juvenile bud stage 85.420
SRR8316897Juvenile bud stage 41.605
SRR8316894Third green stage 38.014
SRR8316900Third green stage 155.705
SRR8316901Third green stage 155.513
SRR8316898Complete white stage 54.908
SRR8316899Complete white stage 124.585
SRR8316903Complete white stage 62.316
SRR8316902Silver flowering stage65.207
SRR8316904Silver flowering stage74.344
SRR8316905Silver flowering stage35.775
SRR8316906Gold flowering stage 116.273
SRR8316907Gold flowering stage 126.771
SRR8316908Gold flowering stage 109.977
SRP132670SRR6706286Control208.257
SRR6706287Light intensity 50%185.812
SRR6706288Light intensity 20%181.642
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1111.089
CNS0095593Slightly white alabastrum(diploid) 2120.415
CNS0095594Slightly white alabastrum(diploid) 3110.465
CNS0095595Whole white alabastrum(diploid) 2132.114
CNS0095596Whole white alabastrum(diploid) 3140.200
CNS0095597Whole white alabastrum(diploid) 4115.727
CNS0095598Silvery flower (diploied) 168.764
CNS0095599Silvery flower (diploied) 273.912
CNS0095600Silvery flower (diploied) 3149.202
CNS0095601Golden flower (diploid) 159.108
CNS0095602Golden flower (diploid) 2109.246
CNS0095603Golden flower (diploid) 3106.901
CNS0095604Slightly white alabastrum(tetraploid) 1162.055
CNS0095605Slightly white alabastrum(tetraploid) 2169.782
CNS0095606Slightly white alabastrum(tetraploid) 3147.283
CNS0095607Whole white alabastrum(tetraploid) 1158.513
CNS0095608Whole white alabastrum(tetraploid) 2163.784
CNS0095609Whole white alabastrum(tetraploid) 3190.971
CNS0095610Silvery flower (tetraploid) 1164.609
CNS0095611Silvery flower (tetraploid) 2164.206
CNS0095612Silvery flower (tetraploid) 3157.790
CNS0095613Golden flower (tetraploid) 1108.905
CNS0095614Golden flower (tetraploid) 2140.332
CNS0095615Golden flower (tetraploid) 3109.335
CRA001975CRR073297Stem 193.848
CRR073298Stem 2109.698
CRR073299Stem 3116.423
CRR073300Leaf 1120.670
CRR073301Leaf 2148.960
CRR073302Leaf 3152.920
CRR073303Juvenile bud 1129.169
CRR073304Juvenile bud 2168.107
CRR073305Juvenile bud 3100.544
CRR073306Third green 1108.535
CRR073307Third green 2105.632
CRR073308Third green 3107.835
CRR073309Second white 1102.460
CRR073310Second white 277.255
CRR073311Second white 361.671
CRR073312Silver flowering 158.142
CRR073313Silver flowering 252.122
CRR073314Silver flowering 348.890
CRR073315Gold flowering 148.040
CRR073316Gold flowering 258.976
CRR073317Gold flowering 352.276
CRR073318Tawny withering 168.173
CRR073319Tawny withering 249.091
CRR073320Tawny withering 364.800