Gene detail

Detail information of GWHGAAZE008051

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO58372.1	0	hypothetical protein CISIN_1g005956mg [Citrus sinensis]
Swissprot	tr\|Q8L828\|COB23_ARATH	1E-11	Coatomer subunit beta'-3
trEMBL	tr\|A0A067F4F5\|A0A067F4F5_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO58372.1}
TAIR10	AT5G24320.1	6E-109	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60290071	60293426	+
GWHAAZE00000002	mRNA	60290071	60293426	+
GWHAAZE00000002	exon	60290071	60290934	+
GWHAAZE00000002	exon	60291029	60291119	+
GWHAAZE00000002	exon	60291210	60291367	+
GWHAAZE00000002	exon	60291482	60291533	+
GWHAAZE00000002	exon	60291773	60291852	+
GWHAAZE00000002	exon	60291944	60292037	+
GWHAAZE00000002	exon	60292903	60293426	+
GWHAAZE00000002	CDS	60290071	60290934	+
GWHAAZE00000002	CDS	60291029	60291119	+
GWHAAZE00000002	CDS	60291210	60291367	+
GWHAAZE00000002	CDS	60291482	60291533	+
GWHAAZE00000002	CDS	60291773	60291852	+
GWHAAZE00000002	CDS	60291944	60292037	+
GWHAAZE00000002	CDS	60292903	60293426	+

Transcript Sequence
>GWHTAAZE008059 ATGCTGAGGTTTGATGAGGAAGAAGAGTTCTTTGACACCGCGGATTATTTGTCGTCAGACGAGTCTAATTTTACGAAAGAAGAAGATATAGAATTAGAGAATAGAAATTTAGGTTATGATATTTGGAGTGGGGAGCCAAAGAGTGTTAAGGAAAGAAGGGAATCCTTTTTAAGTCGAATGGGTTTTCTCGAATCGGAAAGGATTGAGGAGTGTAGTGGAGCTGTTTCGTGTTCCTCGGTGGAGGAAAATGTTGATTGTTGTTCAAGGGAATTGAATGGTGAAGCAAATTGTATGGCTGATGAATTGGACCATGACCAATCAAACGATATGGGAAGTGCAAATTATCCACTTTCTGTTGAACAGTTTGGACATGGGCAAGCACGTGTACATGATGAATGTAAAAAGGTAGATGTAAATAAGAAATTGAAATGGTGGAAGAGCTTCAAAAACAAGAAGAAACCAGTTGCCAAAAAATCCAAGGGTAGTAGAATGAAGGTGCACCAGAACAAGAAGAAGTGTATGGAGTTTACTGCAGTGTATGTTGAACAAGAAATTCAAGCCCACGATGGCCTAATTTGGACCATGAAGTTTAGCCCCGATGGCCAGTATTTAGCAAGTGGGGGTGAAGACGGTGTTGTTCGTGTATGGCGTGTGAGAACCGTAGATGCTTCATACAAGAATCTATGTAATGAATCCAATTTTCATAGCCAAAGGATGGAAAAAAAATCTAGTTTTGGAATGAAAAAGTCGAGCCCGGCTTCAGTTATCATACCAGATAAGGTCTTCGAGATTGAGGAGTTCCCGCTGCATGAGTTTTATGGTCATACTGATAATGTCTTGGACCTGGCTTGGTCCAACTCTAATTGTCTGATCTCATCATCCATGGATAAAACTGTCCGTTTATGGCAAGTGGGATACGATGATTGTCTTGGCATTTTCCGCCACAGTAACTATGTAACGTGCATCCAGTTCAATCCTACCGACGAAAACTATTTCATCAGTGGCTCCCTTGATGGAAAAGTCCGAATTTGGGGGGTGTGCGAGAGGCGGGTTGTGGATTGGGTGGATATTCGACATGTAGTCACCGCTATATGTTACCAACCAAATGGACAAGGCTTCATAGTTGGTTCTATTGCCGGTACCTGCCGATTCTACGAAGCATCAGGCAATGATCTTCTTCTGAATGCGGAGATACATATTTGCAGTAGAAAGAAAACCTCCGGCCACAAAATTACTGGCATTCAGTTTTTGGAAGAAGAATCTCAAAGAGTTATGATAACGTCTGAGGACTCTAAAGTTCGTATACTCGATGGGGCTGAAGTTGTGTATAAATATAAAGCTCTCCCAAAATCAGGAAGCCAAATGTCGGCTTCATTGGCTTCAACCAGACAACACATAATATCAGTTGGGGAGGATTCCCGCATCTATGTCTGGAACTATGACGATTTGCGCATCCCATCTTCAAAGCCTAAAAAATCAACACGAGCATGCGAGCATTTCTTCTCCGAAGGCGTGTCGGTTGCAATACCATGGTCAGGCAAACACAAGTCTTTGGCTAGTGGCACTCCCCGGTGTGGTGTCCAAACACCAACGGAACCCCAAGACTCGGACCGGTTTTCACTATCAAGCTGGTTCTTCATGGATGTTGGCTCGTGTAGGGGCACAGCCACGTGGCCCGAGGAGAAACTTCCCTTGTGGGATCCACCAGTTCGAGAAGATGGTCAATGGAACCAGCCTTATAGTCATAATAACAGCAAGAACCATGGGATTTTAGCATCGACTTGGGGTCTTGTGATTGTGACTGGTGGTTCAGATGGAATGATTCGAACGTTCCACAATTATGGGTTACCCACGAGGATTTAG

Network for GWHGAAZE008051

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	185	216	1.90E-07
PF00400.33	WD40	268	302	9.00E-07
PF00400.33	WD40	308	344	4.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.518
	SRR3591706	second leaf	1.445
	SRR3591707	mature leaf	0.830
	SRR3591708	Shoot apex	2.319
	SRR3591709	Stem	2.773
	SRR3591710	White floral bud	0.958
	SRR3591711	White flower	4.745
	SRR3591712	Green floral bud	0.548
	SRR3591713	Yellow flower	3.004
SRP173429	SRR8316895	Juvenile bud stage	1.352
	SRR8316896	Juvenile bud stage	0.398
	SRR8316897	Juvenile bud stage	0.126
	SRR8316894	Third green stage	0.676
	SRR8316900	Third green stage	0.429
	SRR8316901	Third green stage	0.667
	SRR8316898	Complete white stage	0.168
	SRR8316899	Complete white stage	2.546
	SRR8316903	Complete white stage	1.395
	SRR8316902	Silver flowering stage	0.039
	SRR8316904	Silver flowering stage	0.304
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.132
	SRR8316907	Gold flowering stage	0.129
	SRR8316908	Gold flowering stage	0.230
SRP132670	SRR6706286	Control	0.735
	SRR6706287	Light intensity 50%	0.570
	SRR6706288	Light intensity 20%	0.536
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.362
	CNS0095593	Slightly white alabastrum(diploid) 2	0.150
	CNS0095594	Slightly white alabastrum(diploid) 3	1.313
	CNS0095595	Whole white alabastrum(diploid) 2	0.749
	CNS0095596	Whole white alabastrum(diploid) 3	0.243
	CNS0095597	Whole white alabastrum(diploid) 4	0.907
	CNS0095598	Silvery flower (diploied) 1	4.989
	CNS0095599	Silvery flower (diploied) 2	2.428
	CNS0095600	Silvery flower (diploied) 3	2.332
	CNS0095601	Golden flower (diploid) 1	3.293
	CNS0095602	Golden flower (diploid) 2	4.402
	CNS0095603	Golden flower (diploid) 3	3.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.504
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.594
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.570
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.192
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.349
	CNS0095610	Silvery flower (tetraploid) 1	2.050
	CNS0095611	Silvery flower (tetraploid) 2	0.930
	CNS0095612	Silvery flower (tetraploid) 3	0.247
	CNS0095613	Golden flower (tetraploid) 1	1.188
	CNS0095614	Golden flower (tetraploid) 2	2.072
	CNS0095615	Golden flower (tetraploid) 3	0.098
CRA001975	CRR073297	Stem 1	0.453
	CRR073298	Stem 2	0.892
	CRR073299	Stem 3	0.350
	CRR073300	Leaf 1	0.593
	CRR073301	Leaf 2	0.709
	CRR073302	Leaf 3	0.151
	CRR073303	Juvenile bud 1	0.990
	CRR073304	Juvenile bud 2	0.228
	CRR073305	Juvenile bud 3	1.550
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.102
	CRR073308	Third green 3	0.077
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.033
	CRR073311	Second white 3	0.050
	CRR073312	Silver flowering 1	0.446
	CRR073313	Silver flowering 2	0.236
	CRR073314	Silver flowering 3	0.411
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.205
	CRR073317	Gold flowering 3	0.097
	CRR073318	Tawny withering 1	0.100
	CRR073319	Tawny withering 2	0.153
	CRR073320	Tawny withering 3	0.113