Detail information of GWHGAAZE008058


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275031.11.13918E-39PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera]
trEMBLtr|A5AEG8|A5AEG8_VITVI4E-40Putative uncharacterized protein {ECO:0000313|EMBL:CAN71192.1}
TAIR10AT5G48920.12E-13tracheary element differentiation-related 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6043911160439800+
GWHAAZE00000002mRNA6043911160439800+
GWHAAZE00000002exon6043911160439800+
GWHAAZE00000002CDS6043911160439800+
Transcript Sequence

Network for GWHGAAZE008058

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0249


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.113
SRR3591706second leaf0.592
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.696
SRR3591709Stem5.719
SRR3591710White floral bud0.837
SRR3591711White flower0.296
SRR3591712Green floral bud1.078
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.234
SRR8316896Juvenile bud stage 0.895
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.619
SRR8316900Third green stage 6.148
SRR8316901Third green stage 5.703
SRR8316898Complete white stage 0.133
SRR8316899Complete white stage 1.735
SRR8316903Complete white stage 0.635
SRR8316902Silver flowering stage0.442
SRR8316904Silver flowering stage0.314
SRR8316905Silver flowering stage0.122
SRR8316906Gold flowering stage 0.204
SRR8316907Gold flowering stage 0.204
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control5.264
SRR6706287Light intensity 50%3.845
SRR6706288Light intensity 20%4.119
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.917
CNS0095593Slightly white alabastrum(diploid) 20.696
CNS0095594Slightly white alabastrum(diploid) 30.683
CNS0095595Whole white alabastrum(diploid) 20.684
CNS0095596Whole white alabastrum(diploid) 30.910
CNS0095597Whole white alabastrum(diploid) 40.793
CNS0095598Silvery flower (diploied) 10.036
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.393
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.054
CNS0095603Golden flower (diploid) 30.142
CNS0095604Slightly white alabastrum(tetraploid) 10.086
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 36.044
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 34.133
CNS0095610Silvery flower (tetraploid) 10.084
CNS0095611Silvery flower (tetraploid) 20.059
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.074
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.255
CRA001975CRR073297Stem 10.668
CRR073298Stem 21.030
CRR073299Stem 30.533
CRR073300Leaf 12.061
CRR073301Leaf 22.020
CRR073302Leaf 31.380
CRR073303Juvenile bud 10.553
CRR073304Juvenile bud 20.622
CRR073305Juvenile bud 30.646
CRR073306Third green 10.701
CRR073307Third green 20.874
CRR073308Third green 30.268
CRR073309Second white 10.000
CRR073310Second white 20.098
CRR073311Second white 30.054
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.421
CRR073319Tawny withering 20.061
CRR073320Tawny withering 30.224