Detail information of GWHGAAZE008060


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006347972.13.3533E-113PREDICTED: 4,5-DOPA dioxygenase extradiol-like [Solanum tuberosum]
Swissprottr|Q949R4|DIOXL_ARATH8E-90Extradiol ring-cleavage dioxygenase
trEMBLtr|M1DQC9|M1DQC9_SOLTU1E-113Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400092702}
TAIR10AT4G15093.12E-74catalytic LigB subunit of aromatic ring-opening dioxygenase family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6044633760453573-
GWHAAZE00000002mRNA6044633760453573-
GWHAAZE00000002exon6045331060453573-
GWHAAZE00000002exon6044931960449692-
GWHAAZE00000002exon6044810160448331-
GWHAAZE00000002exon6044719960447369-
GWHAAZE00000002exon6044633760446529-
GWHAAZE00000002CDS6045331060453573-
GWHAAZE00000002CDS6044931960449692-
GWHAAZE00000002CDS6044810160448331-
GWHAAZE00000002CDS6044719960447369-
GWHAAZE00000002CDS6044633760446529-
Transcript Sequence

Network for GWHGAAZE008060

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02900.19LigB152132.30E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15777DOPA Betalain biosynthesis map00965

Gene Ontology

GO term OntologyName
GO:0006725biological_processcellular aromatic compound metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0008198molecular_functionferrous iron binding
GO:0016491molecular_functionoxidoreductase activity
GO:0008270molecular_functionzinc ion binding
GO:0016701molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.192
SRR3591706second leaf17.379
SRR3591707mature leaf24.688
SRR3591708Shoot apex16.425
SRR3591709Stem116.149
SRR3591710White floral bud48.224
SRR3591711White flower85.454
SRR3591712Green floral bud25.096
SRR3591713Yellow flower176.381
SRP173429 SRR8316895Juvenile bud stage 62.633
SRR8316896Juvenile bud stage 79.321
SRR8316897Juvenile bud stage 12.776
SRR8316894Third green stage 25.670
SRR8316900Third green stage 76.534
SRR8316901Third green stage 86.775
SRR8316898Complete white stage 59.773
SRR8316899Complete white stage 109.535
SRR8316903Complete white stage 70.309
SRR8316902Silver flowering stage104.745
SRR8316904Silver flowering stage109.959
SRR8316905Silver flowering stage71.220
SRR8316906Gold flowering stage 331.862
SRR8316907Gold flowering stage 327.427
SRR8316908Gold flowering stage 240.430
SRP132670SRR6706286Control91.970
SRR6706287Light intensity 50%90.426
SRR6706288Light intensity 20%89.125
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.001
CNS0095593Slightly white alabastrum(diploid) 251.486
CNS0095594Slightly white alabastrum(diploid) 375.557
CNS0095595Whole white alabastrum(diploid) 262.287
CNS0095596Whole white alabastrum(diploid) 355.282
CNS0095597Whole white alabastrum(diploid) 464.752
CNS0095598Silvery flower (diploied) 162.829
CNS0095599Silvery flower (diploied) 265.368
CNS0095600Silvery flower (diploied) 3154.884
CNS0095601Golden flower (diploid) 185.990
CNS0095602Golden flower (diploid) 2157.520
CNS0095603Golden flower (diploid) 3157.600
CNS0095604Slightly white alabastrum(tetraploid) 146.095
CNS0095605Slightly white alabastrum(tetraploid) 243.741
CNS0095606Slightly white alabastrum(tetraploid) 360.390
CNS0095607Whole white alabastrum(tetraploid) 148.972
CNS0095608Whole white alabastrum(tetraploid) 251.054
CNS0095609Whole white alabastrum(tetraploid) 364.855
CNS0095610Silvery flower (tetraploid) 1169.944
CNS0095611Silvery flower (tetraploid) 2136.681
CNS0095612Silvery flower (tetraploid) 3150.576
CNS0095613Golden flower (tetraploid) 1264.419
CNS0095614Golden flower (tetraploid) 2232.711
CNS0095615Golden flower (tetraploid) 3276.944
CRA001975CRR073297Stem 193.976
CRR073298Stem 289.397
CRR073299Stem 394.983
CRR073300Leaf 172.399
CRR073301Leaf 269.694
CRR073302Leaf 362.321
CRR073303Juvenile bud 171.349
CRR073304Juvenile bud 283.221
CRR073305Juvenile bud 357.823
CRR073306Third green 1172.052
CRR073307Third green 2178.399
CRR073308Third green 3136.760
CRR073309Second white 1129.298
CRR073310Second white 2191.304
CRR073311Second white 3185.284
CRR073312Silver flowering 1180.181
CRR073313Silver flowering 2138.681
CRR073314Silver flowering 3178.915
CRR073315Gold flowering 139.319
CRR073316Gold flowering 237.912
CRR073317Gold flowering 331.005
CRR073318Tawny withering 1109.354
CRR073319Tawny withering 292.299
CRR073320Tawny withering 389.018