Gene detail

Detail information of GWHGAAZE008069

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007029672.1	Vacuolar ATP synthase subunit H family protein isoform 2 [Theobroma cacao]
Swissprot	tr\|Q9LX65\|VATH_ARATH	V-type proton ATPase subunit H
trEMBL	tr\|A0A061F6S3\|A0A061F6S3_THECC	Vacuolar ATP synthase subunit H family protein isoform 2 {ECO:0000313\|EMBL:EOY10174.1}
TAIR10	AT3G42050.1	vacuolar ATP synthase subunit H family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60574113	60591585	-
GWHAAZE00000002	mRNA	60574113	60591585	-
GWHAAZE00000002	exon	60574113	60574591	-
GWHAAZE00000002	exon	60577739	60577918	-
GWHAAZE00000002	exon	60579566	60579691	-
GWHAAZE00000002	exon	60579816	60579941	-
GWHAAZE00000002	exon	60580583	60580744	-
GWHAAZE00000002	exon	60584754	60584871	-
GWHAAZE00000002	exon	60584975	60585040	-
GWHAAZE00000002	exon	60588867	60588939	-
GWHAAZE00000002	exon	60589013	60589115	-
GWHAAZE00000002	exon	60591177	60591302	-
GWHAAZE00000002	exon	60591574	60591585	-
GWHAAZE00000002	CDS	60591574	60591585	-
GWHAAZE00000002	CDS	60591177	60591302	-
GWHAAZE00000002	CDS	60589013	60589115	-
GWHAAZE00000002	CDS	60588867	60588939	-
GWHAAZE00000002	CDS	60584975	60585040	-
GWHAAZE00000002	CDS	60584754	60584871	-
GWHAAZE00000002	CDS	60580583	60580744	-
GWHAAZE00000002	CDS	60579816	60579941	-
GWHAAZE00000002	CDS	60579566	60579691	-
GWHAAZE00000002	CDS	60577739	60577918	-
GWHAAZE00000002	CDS	60574343	60574591	-
GWHAAZE00000002	three_prime_UTR	60574113	60574342	-

Transcript Sequence
>GWHTAAZE008077 ATGGAAGATCCCGTTCTGGAGAGGGATATCCCATGGGAAACGTACATGTCTACCAAGCTGATCACAGGAACAGGCCTTCAGCTTTTAAGGCGATATGATAAAAAACCTCAACCCTACAGAGCTCAATTACTGGATGAGGACGGTCCAGCTTATGTTCGTGTGTTTGTTGGCATTTTGCGTGACATACTTAAGGAAGAAACAGTGGAATACGTTCTAGCTTTAATTGATGAAATGCTTACAGCTAACCCTAATAGAGCCAGATTATTCCATGACAATTCTCTTGAAAATGATGACATTTACGAACCTTTTCTAAGATTGCTTTGGAAGGGTAATTGGTATATACAGGAGAAGAGCTGTAAGATACTTTCCTTGATAGTAAGTGGTAGACCAAAAGTTCAGAATGGTGTTCATGCAAATGGGGAAGCCTCAAATTCAAATAAGAAATTCACTGCTATTACTGACGTTTTGAAAGACCTTGTGGAGTGGCTCTGTTCTCAGCTGAAGAAGCCTTCTGATCCTAGCCGTAGCATTCCAACTGCAATCAATTGCCTAAAAATTTTATTGAAGGAACCTGTGGTAAGATCTTCATTTGTTCAAGCAGATGGAGTGAAGCAGCTTGTTCCTTTAATTTCTCCAGCATCAACTCAGCAATCCATGCAGCTCCTTTATGAGACATGCCTCTGTGTTTGGCTTTTATCTTTCTATGAACCCGCAATTGAGTACTTGGCCACTACTAGAACCCTGCCACAACTAATTGAGGTCGTTAAGGGTTCCACAAAAGAGAAGGTTGTCAGGGTAATCGTATTGACACTCAAGAACTTGCTATCCAAATTGAATTTTGGTGCTCAGATGGTTGACCTCGGGCTGCCCCAAATTGTTCAGAATCTGAAAGCACAGGCATGGAGTGATGAGGACTTAGTGGAGGCATTGAGTCAACTGGAAGAAGGACTGAATGATAACATTAAAAAGCTGAGTTCTTTTGACAAATACAAGCAGGAAGTCCTTCTTGGCCATCTTGACTGGTCCCCTATGCACAAAGATCCTATGTTCTGGCGTGATAACATTACAAACTTTGAAGAGAATGGTTTCCAGATCCTGAGGGTACTGATTACAATTTTGGACACATCAAGCGATACAAGGGCACTTGCAGTTGCTTGTTTTGACCTCTCGATGTTCATTCAGCAGCATCCTGCAGGACGTGTCATAGTGAATGACCTCAAAGCCAAGGAACGCGTTATGAAATTGATGAACCACGTCGATACTGAGGTTACCAAAAATGCCCTTCTCTGCATCCAACGCCTTTTCCTCGGTGCCAAATACGCAAGCTTTTTGCAGGCCTAGTTTCGTACTTTTTGGACCCTTAATTGACTACTGGATATAATTATAGTGTAGTTTTCCAAATGAAAGAACGCGAGGGTTTGGCTTGTGCAGTGATGTATGGTTTAGCGTTTTTTCTAATCTGTGTGAACCGTGTTCCACTATTATTTATTTTTCTGAAATTATGGAATAAAATCAACACATGTTTTTGAATATGATTGTATTGAGTAATGTTTGCGGACTTCAACTGTTTA

Network for GWHGAAZE008069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03224.15	V-ATPase_H_N	5	317	1.20E-81
PF11698.9	V-ATPase_H_C	323	435	7.80E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02144	ATPeV1H	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Lysosome	map04142
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005515	molecular_function	protein binding
GO:0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.654
	SRR3591706	second leaf	17.283
	SRR3591707	mature leaf	6.207
	SRR3591708	Shoot apex	28.709
	SRR3591709	Stem	23.106
	SRR3591710	White floral bud	19.521
	SRR3591711	White flower	12.895
	SRR3591712	Green floral bud	42.911
	SRR3591713	Yellow flower	9.393
SRP173429	SRR8316895	Juvenile bud stage	24.999
	SRR8316896	Juvenile bud stage	37.041
	SRR8316897	Juvenile bud stage	22.689
	SRR8316894	Third green stage	17.632
	SRR8316900	Third green stage	57.374
	SRR8316901	Third green stage	55.516
	SRR8316898	Complete white stage	9.347
	SRR8316899	Complete white stage	33.596
	SRR8316903	Complete white stage	11.259
	SRR8316902	Silver flowering stage	3.995
	SRR8316904	Silver flowering stage	6.584
	SRR8316905	Silver flowering stage	2.684
	SRR8316906	Gold flowering stage	7.133
	SRR8316907	Gold flowering stage	6.273
	SRR8316908	Gold flowering stage	10.889
SRP132670	SRR6706286	Control	17.114
	SRR6706287	Light intensity 50%	15.802
	SRR6706288	Light intensity 20%	20.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.731
	CNS0095593	Slightly white alabastrum(diploid) 2	37.677
	CNS0095594	Slightly white alabastrum(diploid) 3	37.114
	CNS0095595	Whole white alabastrum(diploid) 2	43.380
	CNS0095596	Whole white alabastrum(diploid) 3	52.462
	CNS0095597	Whole white alabastrum(diploid) 4	40.319
	CNS0095598	Silvery flower (diploied) 1	19.573
	CNS0095599	Silvery flower (diploied) 2	18.695
	CNS0095600	Silvery flower (diploied) 3	11.128
	CNS0095601	Golden flower (diploid) 1	14.604
	CNS0095602	Golden flower (diploid) 2	9.948
	CNS0095603	Golden flower (diploid) 3	10.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.784
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.450
	CNS0095610	Silvery flower (tetraploid) 1	9.535
	CNS0095611	Silvery flower (tetraploid) 2	9.132
	CNS0095612	Silvery flower (tetraploid) 3	16.776
	CNS0095613	Golden flower (tetraploid) 1	4.320
	CNS0095614	Golden flower (tetraploid) 2	7.186
	CNS0095615	Golden flower (tetraploid) 3	4.103
CRA001975	CRR073297	Stem 1	26.833
	CRR073298	Stem 2	27.374
	CRR073299	Stem 3	21.369
	CRR073300	Leaf 1	37.376
	CRR073301	Leaf 2	31.334
	CRR073302	Leaf 3	35.523
	CRR073303	Juvenile bud 1	31.145
	CRR073304	Juvenile bud 2	32.314
	CRR073305	Juvenile bud 3	22.201
	CRR073306	Third green 1	11.011
	CRR073307	Third green 2	8.368
	CRR073308	Third green 3	10.121
	CRR073309	Second white 1	5.133
	CRR073310	Second white 2	3.476
	CRR073311	Second white 3	5.406
	CRR073312	Silver flowering 1	3.859
	CRR073313	Silver flowering 2	2.410
	CRR073314	Silver flowering 3	1.989
	CRR073315	Gold flowering 1	10.918
	CRR073316	Gold flowering 2	14.364
	CRR073317	Gold flowering 3	8.546
	CRR073318	Tawny withering 1	15.124
	CRR073319	Tawny withering 2	15.505
	CRR073320	Tawny withering 3	19.564