Gene detail

Detail information of GWHGAAZE008076

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625610.1	0	PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q84JL2\|ODBA2_ARATH	0	2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBL	tr\|D7U4C7\|D7U4C7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37524.3}
TAIR10	AT5G09300.1	4E-173	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60739217	60745458	-
GWHAAZE00000002	mRNA	60739217	60745458	-
GWHAAZE00000002	exon	60739217	60739384	-
GWHAAZE00000002	exon	60739943	60740128	-
GWHAAZE00000002	exon	60740971	60741136	-
GWHAAZE00000002	exon	60741193	60741296	-
GWHAAZE00000002	exon	60742247	60742346	-
GWHAAZE00000002	exon	60742463	60742620	-
GWHAAZE00000002	exon	60743298	60743480	-
GWHAAZE00000002	exon	60743586	60743723	-
GWHAAZE00000002	exon	60745186	60745458	-
GWHAAZE00000002	CDS	60745186	60745458	-
GWHAAZE00000002	CDS	60743586	60743723	-
GWHAAZE00000002	CDS	60743298	60743480	-
GWHAAZE00000002	CDS	60742463	60742620	-
GWHAAZE00000002	CDS	60742247	60742346	-
GWHAAZE00000002	CDS	60741193	60741296	-
GWHAAZE00000002	CDS	60740971	60741136	-
GWHAAZE00000002	CDS	60739943	60740128	-
GWHAAZE00000002	CDS	60739217	60739384	-

Transcript Sequence
>GWHTAAZE008084 ATGGCTCTCTTCTTATCAAAATCCTCCAATAATAATGTTCTTATGCGTAATCTCATCAAATCAAAATTGGGTTTCTTGGGTTCCATCAATCGCACTTCTCCGAGTCCAGATCTTCATACACCATCTTCATTTCAAAATCATTTGATAAACCCAGTTCCAGTTTCCACCATTAATCATCTACCAACCCTTCTCCGTTTTAAATCCACCCTAGCCGAACAAAAGAGTTTGGATTCTTCTTCTCTGCAGGATGTTGTTACTGAAGACAGTAGTAAGTTCTTGAATTTTCCAGGTGGAAATGTCAAATTCACCTCAGATTTGAGATTTATACCTGAATCTTCTGAGGAGCGGGTCCACTGCTACCGGGTCCTTGATGATAATGGTCTGCCACTTATATCTACCAATTCTATACAGATCGGCAAAGAAGTTGCTGTAAAAATGTACACCAACATGGTCACGCTTCAAGTTATGGATACTATTTTCTATGAAGCACAAAGGCAGGGTAGAATTTCTTTCTATGTCACCCAAATCGGAGAAGAGGCCATCAATATTGCATCCGCAGCTGCTCTCAACTTTGATGACCTTGTCTTCCCTCAGTACAGGGAGGCCGGGGTACTATTGTGGAGGGGATTTACCCTTCAAGAATTTGCAAACCAGTTGTTTGGAAACAAAGCTGATTATGGAAAAGGCAAGCAAATGCCGGTTCATTATGGGTCAAACAAGCTCAACTACATCACAGTTGCATCAACGGTTGCCACACAAATTCCGCATGCAGTTGGGGCTGCATATTCCCTGAAGATGGATGGACGAGATGCATGCTCAATTACTTATTTTGGGGATGGAGGCACTAGTACAGGAGATTTCCATGCTGCTTTGAACTTTGCGGCAGTTCTGGAGACCCCAGTAATATTTTTCTGCCGAAACAACGGATGGGCCATCAGCACCCCCGTTGCAGATCAGAATCTGAGTCTCTGTTTGGTGGCAGGTGATGGTGTTGTTGTTAGAGGACAGGCCTATGGCGTTCGTAGTATTCGTGTAGACGGTAATGATGCTCTTGCTATTTACAGTGCTGTTCACGAGGCACGAAAAATAGCTATTGCTGAAAATAGACCTGTATTAATCGAGGCCCTCACATACAGAGCAGGACACCACTCCACATCGGATGACTCCACCAAATATCGCCAAGCAAATGAGATGGAATTGTGGAGAAAGGTAAAGGATCCTGTTGCAAGGTTTGGAAACTGGATTAAAAGCAAAGGGTGGTGGAGTGCCGAGGCCGAGTCTGAACTTCGAAGTAGCGTTAGGAAGCAGCTCTCACACGCGATTCAAGTGGCTGAGAAGTTTGAGAAACTTCCGGTTTCGGACATGTTCAGCGATGTATACGAAGTTCCTCCGGCCAACCTCATTGAGCAAGGGGCTTCACTTAGAGAGGCTATCAAAAGACATCCGCAGGACTATCCCCCCGGTTTTCCACTCTGA

Network for GWHGAAZE008076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00676.21	E1_dh	149	450	2.60E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00166	BCKDHA, bkdA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.923
	SRR3591706	second leaf	10.474
	SRR3591707	mature leaf	3.051
	SRR3591708	Shoot apex	19.459
	SRR3591709	Stem	12.661
	SRR3591710	White floral bud	9.145
	SRR3591711	White flower	7.439
	SRR3591712	Green floral bud	13.381
	SRR3591713	Yellow flower	8.021
SRP173429	SRR8316895	Juvenile bud stage	15.408
	SRR8316896	Juvenile bud stage	18.878
	SRR8316897	Juvenile bud stage	7.991
	SRR8316894	Third green stage	9.025
	SRR8316900	Third green stage	24.996
	SRR8316901	Third green stage	23.943
	SRR8316898	Complete white stage	8.785
	SRR8316899	Complete white stage	27.187
	SRR8316903	Complete white stage	11.923
	SRR8316902	Silver flowering stage	4.326
	SRR8316904	Silver flowering stage	5.391
	SRR8316905	Silver flowering stage	4.083
	SRR8316906	Gold flowering stage	10.570
	SRR8316907	Gold flowering stage	10.241
	SRR8316908	Gold flowering stage	7.678
SRP132670	SRR6706286	Control	26.529
	SRR6706287	Light intensity 50%	26.265
	SRR6706288	Light intensity 20%	29.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.638
	CNS0095593	Slightly white alabastrum(diploid) 2	22.431
	CNS0095594	Slightly white alabastrum(diploid) 3	13.799
	CNS0095595	Whole white alabastrum(diploid) 2	15.241
	CNS0095596	Whole white alabastrum(diploid) 3	15.027
	CNS0095597	Whole white alabastrum(diploid) 4	13.378
	CNS0095598	Silvery flower (diploied) 1	8.873
	CNS0095599	Silvery flower (diploied) 2	10.651
	CNS0095600	Silvery flower (diploied) 3	10.346
	CNS0095601	Golden flower (diploid) 1	9.889
	CNS0095602	Golden flower (diploid) 2	8.506
	CNS0095603	Golden flower (diploid) 3	8.487
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.583
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.140
	CNS0095610	Silvery flower (tetraploid) 1	4.266
	CNS0095611	Silvery flower (tetraploid) 2	3.969
	CNS0095612	Silvery flower (tetraploid) 3	1.365
	CNS0095613	Golden flower (tetraploid) 1	1.710
	CNS0095614	Golden flower (tetraploid) 2	3.326
	CNS0095615	Golden flower (tetraploid) 3	0.643
CRA001975	CRR073297	Stem 1	20.748
	CRR073298	Stem 2	21.255
	CRR073299	Stem 3	15.598
	CRR073300	Leaf 1	20.515
	CRR073301	Leaf 2	22.062
	CRR073302	Leaf 3	15.349
	CRR073303	Juvenile bud 1	19.052
	CRR073304	Juvenile bud 2	14.257
	CRR073305	Juvenile bud 3	20.346
	CRR073306	Third green 1	5.895
	CRR073307	Third green 2	6.504
	CRR073308	Third green 3	5.237
	CRR073309	Second white 1	2.314
	CRR073310	Second white 2	0.821
	CRR073311	Second white 3	0.724
	CRR073312	Silver flowering 1	0.525
	CRR073313	Silver flowering 2	1.588
	CRR073314	Silver flowering 3	1.297
	CRR073315	Gold flowering 1	1.927
	CRR073316	Gold flowering 2	2.808
	CRR073317	Gold flowering 3	1.879
	CRR073318	Tawny withering 1	8.376
	CRR073319	Tawny withering 2	9.801
	CRR073320	Tawny withering 3	10.598