Gene detail

Detail information of GWHGAAZE008084

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011099704.1	PREDICTED: DNA polymerase delta catalytic subunit [Sesamum indicum]
Swissprot	tr\|O48901\|DPOD1_SOYBN	DNA polymerase delta catalytic subunit
trEMBL	tr\|A0A061F522\|A0A061F522_THECC	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR10	AT5G63960.1	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60969989	60982799	+
GWHAAZE00000002	mRNA	60969989	60982799	+
GWHAAZE00000002	exon	60969989	60970151	+
GWHAAZE00000002	exon	60970273	60970383	+
GWHAAZE00000002	exon	60971708	60971814	+
GWHAAZE00000002	exon	60971951	60972113	+
GWHAAZE00000002	exon	60972529	60972724	+
GWHAAZE00000002	exon	60972847	60972964	+
GWHAAZE00000002	exon	60973068	60973205	+
GWHAAZE00000002	exon	60973422	60973499	+
GWHAAZE00000002	exon	60973984	60974075	+
GWHAAZE00000002	exon	60974862	60974928	+
GWHAAZE00000002	exon	60975043	60975114	+
GWHAAZE00000002	exon	60977362	60977414	+
GWHAAZE00000002	exon	60977521	60977572	+
GWHAAZE00000002	exon	60979236	60979322	+
GWHAAZE00000002	exon	60979544	60979663	+
GWHAAZE00000002	exon	60979767	60979865	+
GWHAAZE00000002	exon	60980656	60980763	+
GWHAAZE00000002	exon	60980881	60980976	+
GWHAAZE00000002	exon	60981071	60981136	+
GWHAAZE00000002	exon	60982092	60982148	+
GWHAAZE00000002	exon	60982292	60982379	+
GWHAAZE00000002	exon	60982585	60982799	+
GWHAAZE00000002	CDS	60969989	60970151	+
GWHAAZE00000002	CDS	60970273	60970383	+
GWHAAZE00000002	CDS	60971708	60971814	+
GWHAAZE00000002	CDS	60971951	60972113	+
GWHAAZE00000002	CDS	60972529	60972724	+
GWHAAZE00000002	CDS	60972847	60972964	+
GWHAAZE00000002	CDS	60973068	60973205	+
GWHAAZE00000002	CDS	60973422	60973499	+
GWHAAZE00000002	CDS	60973984	60974075	+
GWHAAZE00000002	CDS	60974862	60974928	+
GWHAAZE00000002	CDS	60975043	60975114	+
GWHAAZE00000002	CDS	60977362	60977414	+
GWHAAZE00000002	CDS	60977521	60977572	+
GWHAAZE00000002	CDS	60979236	60979322	+
GWHAAZE00000002	CDS	60979544	60979663	+
GWHAAZE00000002	CDS	60979767	60979865	+
GWHAAZE00000002	CDS	60980656	60980763	+
GWHAAZE00000002	CDS	60980881	60980976	+
GWHAAZE00000002	CDS	60981071	60981136	+
GWHAAZE00000002	CDS	60982092	60982148	+
GWHAAZE00000002	CDS	60982292	60982379	+
GWHAAZE00000002	CDS	60982585	60982799	+

Transcript Sequence
>GWHTAAZE008092 ATGGACGAGGACGTCTTCCTCGACGAAACCCTAATCCTCCAAGACGAGGAAGAAGCCCTCGTCCTTCGTGATATTGAGGAGCAAGAAGCGCTCACTTCTCGTCTCCATAAATGGAAGCGACCGGTGCTCTCTCAGTCCTACCTCTCCCAGTCTAAGAACATAGTTTTTCAGCAATTGGAGATTGATTACGTGATCGGAGAGAGTCATAAAGAATTGATGCCTAATTCATCCGGCCGTGCTGCTATTATCAGAATTTTTGGTGTCACCAGTGAAGGACATAGCATTTGCTGCCACGTTCACGGGTTTGAACCATATTTCTACATAAGCTGCCCTCCTGGAATGGGCCCTGACGATATCTCCCGTTTTCATCAAATTCTTGAGGGCAAGATGAGGGAATCGAACAGGAACAACAGTATGGTTCCGAAATTTGTTCGGCGTATAGAAATGGTTCAGAAAAGAAGCATTATGTACTACCAGCAGCAGAGTTCTCAGCCTTTCCTTAAAATCGTAGTTGCTTTGCCAACATTGGTTAGCAGCTGCCGTGGTATCCTTGATAGAGGTATACAAATTGACGGTCTTGGTACAAAGAGCTTTATGACGTATGAAAGTAATGTTCTTTTTGCTCTTCGATTTATGATCGACTGCAACATTGTTGGTGGCAATTGGCTTGAAGTTCCGGCTGGAAAATATAAGAAGACAGTGAAGAATCTGTCCTACTCCCAATTAGAGATCGATTGCCTCCATTTGCCAGAAGGAGAATTCTCAAAAATGGCTCCGTTTCGTATATTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGTCTTTTTCCGGAGCCTATCCATGACCCTGTTATCCAGGTGGCCAACTTAGTTACGTTGCAGGGAGAGCATCAGCCATTTGTTCGTAATGTGATGACTCTTAAGACATGCTCGCCTATAGTTGGTGTTGATGTGATGTCATTTGAGACAGAAAGAGACGTCTTGTTAGCTTGGAGGGATTTTATCCGTGAAGTGGATCCTGATATTATTATTGGATATAACATCTGCAAGTTCGATTTGCCTTATCTCATTCAGAGAGCTGAGGCCTTGGGAATAGCAGAATTTCCAATGCTTGGCCGCATCAGGAACAGCAGGGTCCGTGTGAAAGATACTACTTTTTCGTCAAGACAGTATGGGACAAGGGAAAGTAAAGAAGTTACAGTGGAAGGGAGAGTTCAATTTGATTTACTTCAGGCTATGCAAAGAGATTATAAGTTAAGCTCGTACTCGCTGAATTCTGTTTCCGCACATTTTCTTAACGAGCAGCACACTTCAGATCCTGAAAAGCCTTGGGCATTGATGAGTAGGAGCAAAAGCATGTTTGATAGGAGTCTGAAGACCTTCACTGGGGATGTACAGGGAAATGGGATGAAAGAGGATGTCCATCATTCAATTATATCTGACCTTCAAAATGGTAACTCAGAAACCAGGAGGCGGCTGGCTGTGTATTGTTTGAAGGATGCTTACCTCCCCCAGCGACTTTTGGACAAGTTGATGTACATCTACAACTATGTAGAGATGGCTCGTGTTACGGGTGTACCCATATCATTTCTTCTTTCACGAGGGCAGAGCATTAAGGTACTTTCTCAGCTTCTTAGAAAGGCCAAACAGAAGGATCTTATTATTCCTAACGTCAAACATGCAGGATCTGATCAAGGAACATATGAAGGTGCAACTGTTTTGGAGGCTAGGGCAGGATTCTACGAGAAACCGATTGCAACATTAGATTTTGCATCTTTATATCCATCAATCATGATGGCATATAATTTATGCTACTGCACTTTGGTCACTCCTGAGGATGCCCGAAAACTGAATATCCCACCAGAATGTGTCAACAAAACTCCATCTGGTGAAACATTTGTAAAACCAAATTTGCAGAAGGGAATACTTCCAGAAATTCTTGAAGAACTTTTAGCTGCTCGTAAAAGAGCTAAAGCTGATCTGAAGGAAGCGAAAGATCCCCTTGAGAAGGCTGTGTTAGATGGTCGCCAGCTGGCTTTAAAGATAAGTGCAAATTCTGTGTATGGGTTTACTGGAGCTACTGTTGCCCAATTACCATGTTTGGAGATATCATCAAGCGTTACGAGCTATGTTAGGCTTTTGTGCAATGTTTTAAAAAACGAGCGAGTCGTACGAGTCGACTCGCGAGTCGAGGCGAGGCGGAAGAGTGTTGCCTCGAGTCGTACGAGTCAGTGGGAAAATCTGGAACTTACGAGTTTTGTGTGTGAGATGGACGAGTCAACTCGGTTACGAGTTGACTCGTTAAAGGCGGACGAGTCATCTCCTCCCAGAAAAAACAACAAATGA

Network for GWHGAAZE008084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03104.20	DNA_pol_B_exo1	89	427	7.00E-83
PF00136.22	DNA_pol_B	526	714	6.50E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02327	POLD1	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0000166	molecular_function	nucleotide binding
GO:0003676	molecular_function	nucleic acid binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.492
	SRR3591706	second leaf	4.039
	SRR3591707	mature leaf	3.471
	SRR3591708	Shoot apex	12.245
	SRR3591709	Stem	6.100
	SRR3591710	White floral bud	2.231
	SRR3591711	White flower	6.497
	SRR3591712	Green floral bud	2.591
	SRR3591713	Yellow flower	5.608
SRP173429	SRR8316895	Juvenile bud stage	3.178
	SRR8316896	Juvenile bud stage	4.593
	SRR8316897	Juvenile bud stage	2.205
	SRR8316894	Third green stage	1.748
	SRR8316900	Third green stage	2.975
	SRR8316901	Third green stage	3.243
	SRR8316898	Complete white stage	0.486
	SRR8316899	Complete white stage	3.849
	SRR8316903	Complete white stage	1.006
	SRR8316902	Silver flowering stage	1.214
	SRR8316904	Silver flowering stage	2.173
	SRR8316905	Silver flowering stage	1.070
	SRR8316906	Gold flowering stage	3.021
	SRR8316907	Gold flowering stage	2.810
	SRR8316908	Gold flowering stage	2.639
SRP132670	SRR6706286	Control	3.522
	SRR6706287	Light intensity 50%	3.927
	SRR6706288	Light intensity 20%	3.849
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.302
	CNS0095593	Slightly white alabastrum(diploid) 2	1.170
	CNS0095594	Slightly white alabastrum(diploid) 3	0.878
	CNS0095595	Whole white alabastrum(diploid) 2	1.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.780
	CNS0095597	Whole white alabastrum(diploid) 4	0.968
	CNS0095598	Silvery flower (diploied) 1	3.343
	CNS0095599	Silvery flower (diploied) 2	3.878
	CNS0095600	Silvery flower (diploied) 3	3.579
	CNS0095601	Golden flower (diploid) 1	2.509
	CNS0095602	Golden flower (diploid) 2	4.082
	CNS0095603	Golden flower (diploid) 3	3.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.536
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.881
	CNS0095610	Silvery flower (tetraploid) 1	3.232
	CNS0095611	Silvery flower (tetraploid) 2	4.154
	CNS0095612	Silvery flower (tetraploid) 3	1.989
	CNS0095613	Golden flower (tetraploid) 1	1.226
	CNS0095614	Golden flower (tetraploid) 2	2.836
	CNS0095615	Golden flower (tetraploid) 3	1.897
CRA001975	CRR073297	Stem 1	5.554
	CRR073298	Stem 2	3.620
	CRR073299	Stem 3	4.841
	CRR073300	Leaf 1	3.081
	CRR073301	Leaf 2	1.988
	CRR073302	Leaf 3	2.315
	CRR073303	Juvenile bud 1	1.726
	CRR073304	Juvenile bud 2	0.869
	CRR073305	Juvenile bud 3	2.728
	CRR073306	Third green 1	0.188
	CRR073307	Third green 2	0.044
	CRR073308	Third green 3	0.284
	CRR073309	Second white 1	0.376
	CRR073310	Second white 2	0.587
	CRR073311	Second white 3	1.180
	CRR073312	Silver flowering 1	0.420
	CRR073313	Silver flowering 2	0.331
	CRR073314	Silver flowering 3	0.107
	CRR073315	Gold flowering 1	1.329
	CRR073316	Gold flowering 2	2.916
	CRR073317	Gold flowering 3	0.562
	CRR073318	Tawny withering 1	3.575
	CRR073319	Tawny withering 2	2.156
	CRR073320	Tawny withering 3	4.454