Gene detail

Detail information of GWHGAAZE008101

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009793454.1	0	PREDICTED: F-box protein At5g39450 [Nicotiana sylvestris]
Swissprot	tr\|Q8RWD6\|FB271_ARATH	0	F-box protein At5g39450
trEMBL	tr\|A0A067KB26\|A0A067KB26_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP29470.1}
TAIR10	AT5G39450.1	1E-140	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	61447605	61449498	-
GWHAAZE00000002	mRNA	61447605	61449498	-
GWHAAZE00000002	exon	61447605	61448401	-
GWHAAZE00000002	exon	61448485	61448665	-
GWHAAZE00000002	exon	61448749	61449498	-
GWHAAZE00000002	CDS	61448749	61449498	-
GWHAAZE00000002	CDS	61448485	61448665	-
GWHAAZE00000002	CDS	61447605	61448401	-

Transcript Sequence
>GWHTAAZE008109 ATGTCGTGTGGGTCGAGTTTGCTTCTGGCTCTGCCTGATGATATATTCACCATAGTTACCCGGACCCTGACTCCGAGAGATGTATGTAATCTCTGTCTTTGTTGTAGAAGCCTATACGCTCTTGGGGTTTCTGACAAGGTGTGGTTAACCCAATGTAACGTTCTTGATATTGTTCCCCAAAGGGATTTACTCGAATGGCGAAAGGGCGTTTCATCTTACAGGGCGCTTTGCCAGTTCCTTGTATGCGTTCAGCCACTAATCGGGATTTGGGTTCACCAAAATCCTGAGCTTGGGAATGTAGTTTATGTCATGCCGGGTTTTATTTCTGTTGTTGGGTGTCGAATCATCCCACAAGAGCTTGGACCGTTAGGCCTCGAAGATGGGCCTATTTTGTGGGCACCCGTGTTTGAAATTGTGGGTGATGCTGATGGTTCTGCTGCATTTTTTCTTCATGGGAGGGACAAGGAAACTGACTACTTTTATCCAGGTTCGCTCAAGGCTGTTGATAGGACCTGCAATGTGCTTTTGCTAGAGGTTGAACCAAAGCAACAAAGGAATGGGGGTAAATTGGTGCATAGTAAAAGCTTTGCCCATCATCTGGATAAGGAGTTATCGAGAAGGATTTGTCGGTCAGATAGCGGGATTTCGAAATCAGAGAGAGTAGATGGACAGAACGTATCGTCGATGGTGCCGTTCAATAAACTGTCATTTGGTGATAGAAGAAAGCTACTCGACATTGTTACTAGCCAGGATATGGTATATTTATGTGAAAGGAGATCATTGCTTATGCAAATGTATAAGCTTGGTGGAGTTTGCAATGATGGGGAGGGTGATCCTCTAATGCATCCTCCAGATCCTACCCAATTGGACTTGAGCGAGATCAGAAAGAGTCTTGATCGTTCAAGTGGTTTTCGTTCTTCTTCACTTAACGATTCTTGGAAATCAAACTCCTCGATCAGTAGTAGCAACCGCCAAAGCTCCAAGAATAGTTCTTCTAGCGGTGAGAATAGTAATAAGCACGCCCAGCTTCATGAGTTTCTCCGAACAGGTGATACGATAGGACTTACCTTACACGCTTCGTCTGTGAGGCTGTCCTTTTATAGAGCATGGCCAAATATGCACGATAGTCGGTTTGCTCTTTACAAATTGCCAATGCATGCCCCGGCAGTAGGCCAAGAGTATGCTGGTCTATGGGGAGGGACTTTTGGTTGGCCACCCGGGAAGCCTTCAGAAGAAAAGCCCGGAAAGGCTTTGTTCTTTCTTTTACTCTCATACGAAGAATCCCAAGGGAAACGACAACTCATCGGCACCAAAATACTAGAAGGTACTCACTATGTTTTGCATCCAAACGGATCAGCTATGTTTATAGTGAATATTAATGAGCCTTCGCATGAAGCATTCCCGTGGGATACCGATGGAGATTCCCTTCCTCTTGATGTCAGACAAGCTTTTACAGGGGAAGGTATTGCGAACGGGTATGGTTTCCGCTATCCTGGCTCGAGACCTGGTTCGCTCTTCGTTATTCAAGATGAGCTGCTTGCTTTCATATGGAAGGAGTCTAAGGCCGTGCTTACAATGCAGAGGCTTAACTTGCAAGAGCTTTTGAAGAAGGGGGAACGGGTGCCTGCTTTACCTCCAATTGCCAACTTTTCATATTTAACCAAGTCCTACTCAAATGTGTTTGCTGGCTTCACAAATACCTCAAATGGTCTGTCTTCACCCAGGTAA

Network for GWHGAAZE008101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.622
	SRR3591706	second leaf	11.711
	SRR3591707	mature leaf	11.635
	SRR3591708	Shoot apex	14.548
	SRR3591709	Stem	21.832
	SRR3591710	White floral bud	14.643
	SRR3591711	White flower	14.767
	SRR3591712	Green floral bud	18.246
	SRR3591713	Yellow flower	10.491
SRP173429	SRR8316895	Juvenile bud stage	10.890
	SRR8316896	Juvenile bud stage	12.505
	SRR8316897	Juvenile bud stage	5.314
	SRR8316894	Third green stage	5.675
	SRR8316900	Third green stage	17.194
	SRR8316901	Third green stage	14.982
	SRR8316898	Complete white stage	7.185
	SRR8316899	Complete white stage	22.594
	SRR8316903	Complete white stage	12.884
	SRR8316902	Silver flowering stage	5.122
	SRR8316904	Silver flowering stage	9.330
	SRR8316905	Silver flowering stage	5.524
	SRR8316906	Gold flowering stage	14.772
	SRR8316907	Gold flowering stage	11.855
	SRR8316908	Gold flowering stage	13.685
SRP132670	SRR6706286	Control	20.768
	SRR6706287	Light intensity 50%	21.889
	SRR6706288	Light intensity 20%	23.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.841
	CNS0095593	Slightly white alabastrum(diploid) 2	8.041
	CNS0095594	Slightly white alabastrum(diploid) 3	6.758
	CNS0095595	Whole white alabastrum(diploid) 2	7.168
	CNS0095596	Whole white alabastrum(diploid) 3	8.530
	CNS0095597	Whole white alabastrum(diploid) 4	7.289
	CNS0095598	Silvery flower (diploied) 1	8.103
	CNS0095599	Silvery flower (diploied) 2	6.832
	CNS0095600	Silvery flower (diploied) 3	21.202
	CNS0095601	Golden flower (diploid) 1	7.214
	CNS0095602	Golden flower (diploid) 2	17.511
	CNS0095603	Golden flower (diploid) 3	17.090
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.263
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.347
	CNS0095610	Silvery flower (tetraploid) 1	17.520
	CNS0095611	Silvery flower (tetraploid) 2	16.545
	CNS0095612	Silvery flower (tetraploid) 3	19.024
	CNS0095613	Golden flower (tetraploid) 1	7.715
	CNS0095614	Golden flower (tetraploid) 2	13.755
	CNS0095615	Golden flower (tetraploid) 3	20.640
CRA001975	CRR073297	Stem 1	19.308
	CRR073298	Stem 2	19.781
	CRR073299	Stem 3	19.055
	CRR073300	Leaf 1	21.067
	CRR073301	Leaf 2	17.822
	CRR073302	Leaf 3	19.849
	CRR073303	Juvenile bud 1	20.019
	CRR073304	Juvenile bud 2	17.857
	CRR073305	Juvenile bud 3	27.246
	CRR073306	Third green 1	13.468
	CRR073307	Third green 2	9.841
	CRR073308	Third green 3	12.842
	CRR073309	Second white 1	15.531
	CRR073310	Second white 2	15.004
	CRR073311	Second white 3	18.942
	CRR073312	Silver flowering 1	17.855
	CRR073313	Silver flowering 2	16.168
	CRR073314	Silver flowering 3	13.181
	CRR073315	Gold flowering 1	9.611
	CRR073316	Gold flowering 2	11.806
	CRR073317	Gold flowering 3	10.887
	CRR073318	Tawny withering 1	22.722
	CRR073319	Tawny withering 2	15.160
	CRR073320	Tawny withering 3	24.462