Detail information of GWHGAAZE008102


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007159864.10hypothetical protein PHAVU_002G274300g [Phaseolus vulgaris]
Swissprottr|Q8W103|CHR24_ARATH0Protein CHROMATIN REMODELING 24 {ECO:0000303|PubMed:16547115}
trEMBLtr|V7CR82|V7CR82_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW31858.1}
TAIR10AT5G63950.10chromatin remodeling 24

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6145604361483195-
GWHAAZE00000002mRNA6145604361483195-
GWHAAZE00000002exon6145604361456372-
GWHAAZE00000002exon6145669461456828-
GWHAAZE00000002exon6145862461458692-
GWHAAZE00000002exon6146479961464910-
GWHAAZE00000002exon6146966261469780-
GWHAAZE00000002exon6146985961469939-
GWHAAZE00000002exon6147420161474272-
GWHAAZE00000002exon6147438961474551-
GWHAAZE00000002exon6147517261475302-
GWHAAZE00000002exon6147560661475683-
GWHAAZE00000002exon6147578561475922-
GWHAAZE00000002exon6147748361477573-
GWHAAZE00000002exon6147767561477730-
GWHAAZE00000002exon6147783261477909-
GWHAAZE00000002exon6147851561478587-
GWHAAZE00000002exon6147967561479745-
GWHAAZE00000002exon6148080461480858-
GWHAAZE00000002exon6148109361481223-
GWHAAZE00000002exon6148130761482013-
GWHAAZE00000002exon6148217461482314-
GWHAAZE00000002exon6148239961482470-
GWHAAZE00000002exon6148283861482966-
GWHAAZE00000002exon6148305761483195-
GWHAAZE00000002CDS6148305761483195-
GWHAAZE00000002CDS6148283861482966-
GWHAAZE00000002CDS6148239961482470-
GWHAAZE00000002CDS6148217461482314-
GWHAAZE00000002CDS6148130761482013-
GWHAAZE00000002CDS6148109361481223-
GWHAAZE00000002CDS6148080461480858-
GWHAAZE00000002CDS6147967561479745-
GWHAAZE00000002CDS6147851561478587-
GWHAAZE00000002CDS6147783261477909-
GWHAAZE00000002CDS6147767561477730-
GWHAAZE00000002CDS6147748361477573-
GWHAAZE00000002CDS6147578561475922-
GWHAAZE00000002CDS6147560661475683-
GWHAAZE00000002CDS6147517261475302-
GWHAAZE00000002CDS6147438961474551-
GWHAAZE00000002CDS6147420161474272-
GWHAAZE00000002CDS6146985961469939-
GWHAAZE00000002CDS6146966261469780-
GWHAAZE00000002CDS6146479961464910-
GWHAAZE00000002CDS6145862461458692-
GWHAAZE00000002CDS6145669461456828-
GWHAAZE00000002CDS6145620261456372-
GWHAAZE00000002three_prime_UTR6145604361456201-
Transcript Sequence

Network for GWHGAAZE008102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N3756395.10E-30
PF00271.32Helicase_C7438556.00E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.364
SRR3591706second leaf5.168
SRR3591707mature leaf2.170
SRR3591708Shoot apex25.737
SRR3591709Stem8.982
SRR3591710White floral bud5.643
SRR3591711White flower6.320
SRR3591712Green floral bud7.255
SRR3591713Yellow flower4.340
SRP173429 SRR8316895Juvenile bud stage 8.374
SRR8316896Juvenile bud stage 11.301
SRR8316897Juvenile bud stage 11.281
SRR8316894Third green stage 4.520
SRR8316900Third green stage 10.711
SRR8316901Third green stage 9.852
SRR8316898Complete white stage 1.963
SRR8316899Complete white stage 7.426
SRR8316903Complete white stage 3.628
SRR8316902Silver flowering stage1.382
SRR8316904Silver flowering stage2.677
SRR8316905Silver flowering stage0.594
SRR8316906Gold flowering stage 2.628
SRR8316907Gold flowering stage 3.041
SRR8316908Gold flowering stage 8.492
SRP132670SRR6706286Control4.252
SRR6706287Light intensity 50%5.073
SRR6706288Light intensity 20%5.295
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.616
CNS0095593Slightly white alabastrum(diploid) 26.038
CNS0095594Slightly white alabastrum(diploid) 36.824
CNS0095595Whole white alabastrum(diploid) 26.635
CNS0095596Whole white alabastrum(diploid) 37.802
CNS0095597Whole white alabastrum(diploid) 47.714
CNS0095598Silvery flower (diploied) 15.065
CNS0095599Silvery flower (diploied) 25.407
CNS0095600Silvery flower (diploied) 36.486
CNS0095601Golden flower (diploid) 14.016
CNS0095602Golden flower (diploid) 24.550
CNS0095603Golden flower (diploid) 35.311
CNS0095604Slightly white alabastrum(tetraploid) 18.526
CNS0095605Slightly white alabastrum(tetraploid) 27.523
CNS0095606Slightly white alabastrum(tetraploid) 315.626
CNS0095607Whole white alabastrum(tetraploid) 16.892
CNS0095608Whole white alabastrum(tetraploid) 24.829
CNS0095609Whole white alabastrum(tetraploid) 310.249
CNS0095610Silvery flower (tetraploid) 16.733
CNS0095611Silvery flower (tetraploid) 27.159
CNS0095612Silvery flower (tetraploid) 37.171
CNS0095613Golden flower (tetraploid) 12.317
CNS0095614Golden flower (tetraploid) 24.397
CNS0095615Golden flower (tetraploid) 32.996
CRA001975CRR073297Stem 17.403
CRR073298Stem 27.864
CRR073299Stem 37.012
CRR073300Leaf 15.834
CRR073301Leaf 24.595
CRR073302Leaf 34.453
CRR073303Juvenile bud 15.082
CRR073304Juvenile bud 24.051
CRR073305Juvenile bud 35.547
CRR073306Third green 10.966
CRR073307Third green 20.876
CRR073308Third green 31.243
CRR073309Second white 10.810
CRR073310Second white 21.028
CRR073311Second white 30.841
CRR073312Silver flowering 11.114
CRR073313Silver flowering 20.825
CRR073314Silver flowering 30.506
CRR073315Gold flowering 10.974
CRR073316Gold flowering 22.311
CRR073317Gold flowering 30.882
CRR073318Tawny withering 14.577
CRR073319Tawny withering 23.625
CRR073320Tawny withering 35.132