Gene detail

Detail information of GWHGAAZE008143

Functional Annotation

Database	Orthologs	Annotation
Nr	KHN05511.1	ABC transporter G family member 15 [Glycine soja]
Swissprot	tr\|Q8RWI9\|AB15G_ARATH	ABC transporter G family member 15
trEMBL	tr\|I1LIK2\|I1LIK2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09950.1} (Fragment)
TAIR10	AT3G21090.1	ABC-2 type transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62579097	62588427	+
GWHAAZE00000002	mRNA	62579097	62588427	+
GWHAAZE00000002	exon	62579097	62579385	+
GWHAAZE00000002	exon	62584364	62584443	+
GWHAAZE00000002	exon	62584880	62585341	+
GWHAAZE00000002	exon	62586002	62586142	+
GWHAAZE00000002	exon	62586497	62586781	+
GWHAAZE00000002	exon	62586993	62587265	+
GWHAAZE00000002	exon	62587376	62587483	+
GWHAAZE00000002	exon	62588065	62588427	+
GWHAAZE00000002	five_prime_UTR	62579097	62579183	+
GWHAAZE00000002	CDS	62579184	62579385	+
GWHAAZE00000002	CDS	62584364	62584443	+
GWHAAZE00000002	CDS	62584880	62585341	+
GWHAAZE00000002	CDS	62586002	62586142	+
GWHAAZE00000002	CDS	62586497	62586781	+
GWHAAZE00000002	CDS	62586993	62587265	+
GWHAAZE00000002	CDS	62587376	62587483	+
GWHAAZE00000002	CDS	62588065	62588427	+

Transcript Sequence
>GWHTAAZE008151 GGTGGCGGTGGCGGTAGTTCATGATGCTGATGACCAACATTATCATGGTGGAAGTAGTAGTGGTGAGAATCTCGAGGAGGGGAGGAAATGTCATATCCCAACGGTGGTTTTGGTGGTGGTGGGGCTTACATGGTGTGGGAAGATCTAACGGTGGTGATTCCGAACTTTGGGAATGGACCCACAAGGAGGTTGCTCAATGGGCTCACTGGTTATGCTCAGCCTGGTCGGATCTTGGCTATTATGGGTCCTTCTGGTTCTGGGAAGTCCACCCTTCTTGATTCCTTAGCTGGTAGACTTGCAAAAAATGTTATCATGACTGGAAACGTTCTTTTCAATGGAAGGAAGAGAAGGCTAGACTATGGCATTGTTGCTTATGTTACCCAAGAGGATATAATGTTGGGAACTCTCACAGTCAAAGAAACTATCGCGTACTCAGCAAAATTGAGGCTGCCATCAAACATGACAAAATATGAAGTAAATGAAATTGTAGAGGGAACAATCATAGAAATGGGATTACAAGATTGCGCTGATCGGTTGATTGGAAATTGGCATTTAAGAGGTTTAAGTGGTGGGGAGAAGAAGAGACTTAGCATTGCACTAGAGATCCTCACCCGCCCCACCCTCTTGTTTCTCGATGAACCCACCAGCGGCCTTGACAGTGCCTCTGCGTTTTTCGTCATTCAAGCTCTTAGAAATGTTTCTTCTGATGGAAGAACAATTATCTCTTCAATTCACCAGCCAAGTAGTGAAGTTTTTGCACTTTTTGATGACCTTTTTCTGCTTTCCAGTGGCGAGACAGTCTACTTTGGCGAAGCAAAGAAGGCTGTAGAGGTGGAGGACGGGCAGAGGTGCCTAGGATCTTTGGTGAGAGTTAAGGCTACAGCAGAGATCAAAGCAATACTGGTTGAGAAGTACAAACGGTCCAAGTACGCAGTAGGAACTAAAGCAAGGATTCAAGAAATCTCAACTATTGAAGGACTTACAATTGGACACAAAAGTAGCAGTGGGGCAACATGGTGGAAGCAACTATTGATATTAACAAGGAGATCCTTTGTGAACATGTCTAGAGACATTGGATATTACTGGTTACGTATAATTATCTATATAATTTTATCGATATGTGTTGGTACTGTATTTTTTGATGTTGGGACAAACTATACCGCAATCTTGGCTCGTGGAGCTTGTGGTGGTTTTATTTCCGGTTTCATGACAATGATGTCCATCGGAGGTTTCCCGTCCTTCATTGAAGAAATGAAGCTATTCAGTAAAGAAAGGCTTAATGGACATTATGGAGTTGGGGTGTTTATTCTTTCAAACTTCTTGTCATCATTTCCGTTCTTGGCTCTCATGTCAGTGTGTAGCGCCACTATCACATACTACTTGGTGAAATTCCGTCCTGGTTTCTCACACGTTATGTATGCGTACCTTGATCTTTTGTTCTCAATTTCCGTGGTTGAGAGCTGCATGATGGTTATCGCTTCACTGGTTCCCAATTTCTTGATGGGACTTGTAATTGGTGCTGGTTTTGTCGGAATTATGATGATGACAGCCGGGTTCTTTCGGTTCACGCCTGATCTACCCAAGATATTTTGGAGATACCCGATGTCATATCTTAATTATATGTCTTGGGGCTTACAGGGCGCGTACAAGAACGACATGATTGGAATGGAGTTCAATCCGTCTCAGCCAGGCCAGCCGAAGCTGAAGGGTGAATTTATCTTAAGCGAAATGCTAGGTGTCTCCCTCAAACACTCAAAATGGTGGGATTTAGCAGTGGTTATATTCATCCTTGTATGCTACAGACTTCTCTTCTTCGCCATTTTCAAGTTGAAGGAGAGAGCTTCGCCCGTGTTTCATGAAATATATGTGAAGAAAACGCTTAAACATATCAATAAAAGGCCTTCTTTCAGGAAAACTATACCAACTTTCCCTTCTAAGAGGCACCAAACTATTCACTCATTATCTTCTCAAGAGGGCCTTTCTTCTCCTTTTCACCACTAA

Network for GWHGAAZE008143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0212

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	37	187	1.10E-21
PF01061.25	ABC2_membrane	313	522	3.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.652
	SRR3591706	second leaf	6.311
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	37.309
	SRR3591709	Stem	0.513
	SRR3591710	White floral bud	4.062
	SRR3591711	White flower	3.560
	SRR3591712	Green floral bud	53.727
	SRR3591713	Yellow flower	1.354
SRP173429	SRR8316895	Juvenile bud stage	26.237
	SRR8316896	Juvenile bud stage	35.001
	SRR8316897	Juvenile bud stage	16.202
	SRR8316894	Third green stage	12.716
	SRR8316900	Third green stage	25.060
	SRR8316901	Third green stage	25.370
	SRR8316898	Complete white stage	0.343
	SRR8316899	Complete white stage	19.634
	SRR8316903	Complete white stage	1.130
	SRR8316902	Silver flowering stage	0.297
	SRR8316904	Silver flowering stage	0.458
	SRR8316905	Silver flowering stage	0.279
	SRR8316906	Gold flowering stage	0.040
	SRR8316907	Gold flowering stage	0.152
	SRR8316908	Gold flowering stage	0.183
SRP132670	SRR6706286	Control	30.134
	SRR6706287	Light intensity 50%	27.666
	SRR6706288	Light intensity 20%	33.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.173
	CNS0095593	Slightly white alabastrum(diploid) 2	7.222
	CNS0095594	Slightly white alabastrum(diploid) 3	8.403
	CNS0095595	Whole white alabastrum(diploid) 2	6.830
	CNS0095596	Whole white alabastrum(diploid) 3	10.100
	CNS0095597	Whole white alabastrum(diploid) 4	7.157
	CNS0095598	Silvery flower (diploied) 1	9.766
	CNS0095599	Silvery flower (diploied) 2	4.087
	CNS0095600	Silvery flower (diploied) 3	3.674
	CNS0095601	Golden flower (diploid) 1	6.192
	CNS0095602	Golden flower (diploid) 2	2.324
	CNS0095603	Golden flower (diploid) 3	2.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.809
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.785
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.841
	CNS0095610	Silvery flower (tetraploid) 1	4.462
	CNS0095611	Silvery flower (tetraploid) 2	9.021
	CNS0095612	Silvery flower (tetraploid) 3	0.457
	CNS0095613	Golden flower (tetraploid) 1	0.882
	CNS0095614	Golden flower (tetraploid) 2	1.089
	CNS0095615	Golden flower (tetraploid) 3	3.290
CRA001975	CRR073297	Stem 1	37.752
	CRR073298	Stem 2	30.991
	CRR073299	Stem 3	35.053
	CRR073300	Leaf 1	21.540
	CRR073301	Leaf 2	20.806
	CRR073302	Leaf 3	19.176
	CRR073303	Juvenile bud 1	11.487
	CRR073304	Juvenile bud 2	2.122
	CRR073305	Juvenile bud 3	8.414
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.095
	CRR073309	Second white 1	0.018
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.078
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.011
	CRR073316	Gold flowering 2	0.736
	CRR073317	Gold flowering 3	0.194
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000