Gene detail

Detail information of GWHGAAZE008144

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010651218.1	PREDICTED: NAD(H) kinase 1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q56YN3\|NADK1_ARATH	NAD(H) kinase 1
trEMBL	tr\|A0A068UNU2\|A0A068UNU2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_37 {ECO:0000313\|EMBL:CDP09273.1}
TAIR10	AT3G21070.2	NAD kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62648884	62671182	+
GWHAAZE00000002	mRNA	62648884	62671182	+
GWHAAZE00000002	exon	62648884	62648964	+
GWHAAZE00000002	exon	62649660	62649807	+
GWHAAZE00000002	exon	62650396	62650515	+
GWHAAZE00000002	exon	62652364	62652501	+
GWHAAZE00000002	exon	62661089	62661285	+
GWHAAZE00000002	exon	62661520	62661633	+
GWHAAZE00000002	exon	62662251	62662340	+
GWHAAZE00000002	exon	62662552	62662631	+
GWHAAZE00000002	exon	62664088	62664194	+
GWHAAZE00000002	exon	62668789	62668862	+
GWHAAZE00000002	exon	62669759	62669837	+
GWHAAZE00000002	exon	62670002	62670309	+
GWHAAZE00000002	exon	62670874	62671182	+
GWHAAZE00000002	CDS	62648884	62648964	+
GWHAAZE00000002	CDS	62649660	62649807	+
GWHAAZE00000002	CDS	62650396	62650515	+
GWHAAZE00000002	CDS	62652364	62652501	+
GWHAAZE00000002	CDS	62661089	62661285	+
GWHAAZE00000002	CDS	62661520	62661633	+
GWHAAZE00000002	CDS	62662251	62662340	+
GWHAAZE00000002	CDS	62662552	62662631	+
GWHAAZE00000002	CDS	62664088	62664194	+
GWHAAZE00000002	CDS	62668789	62668862	+
GWHAAZE00000002	CDS	62669759	62669837	+
GWHAAZE00000002	CDS	62670002	62670309	+
GWHAAZE00000002	CDS	62670874	62671182	+

Transcript Sequence
>GWHTAAZE008152 ATGTTTCTAGCAATAGATCGAGGGTTCAAACGGTTCAACAATGGCTTGAGTGCTAATGCAATACATGCTGAGGAATTGAAGGGAAGTACAAGTTTTTCACCACAGGAGAATGGTTTTCTGGAATCTCTCTCTGTTTCGAACTCTGAGAAGGCTGTACAAGAACTTGTTCAGCAGCCTCTTGTTCAGGGGATTGATGAACATCTTATAGAGTTCTCAGAGGCTATGAGAACTGTCGCCAAGGCATTAAGGCAAGCTGCTGAAGGGAAGGCTTCTGCTCTTGCTGAGGCTGCTGAATGGAAGCGTAAATATGAATTGGAGAGGGAACGTAATCAGAACTTGGAGCATAAAGGCAATATGACTTTTGCAAATCTTGGAAGTTGCTGTACCCAGGCTTCGTCAGATAATGCAATGGGAATTGTAAGATTTTGTCTTCCGTGTATTGTTTGTTGGGAAATTTGGAAGGAACGGAAAAGGCAAGTATCTGAAGTCCTGTCATCTGGAGAACATAATGGTGATTTTAATGAGAGAGCAGAAAACTTGGCAGACCAACCTGTACTATCAAGTGAAGCTGGTGAGGAATCTGAGTGGTGCTGTGGGAAGAATGGGATTTGCTCTCATGAGGTTCTTCGGGATGGGGAACCTGAATCTAGCTCTGTCACATTTAAAAGCAAATTCAAGAGAAAGGCATCATTTAAACTGTCATGGTGTTGCAAAGGTGAAAAGAGTGATCAGCATAAACATGACATTGTCTCCTTTGAAAGGGGAAATATAACAACTGCAGAGCGCAGTAGTAAACAGATTTCCTTGAAGTGGGAATCTCCTCCGCAGACTGTACTTATTATGACCAAACCAAACTCAACTTCAGTTCAAATTTTATGTGCAGAAATGGTTCACTGCTTATCACTTCACATGTCTCTCATGCCAAATTATAAATCAGATAATCATCAGCTACCAGCAGCACGTGCATGGTGGTTGAAAGAGAAGAGAAAGTTAAACATTTTTGTCGAGCCACGAGTGAAACTTGAACTTCTAAATGAATCATCATATTACAACTTTGTAGAGACCTGGCAAGATGACGAGGAGATCTTGCACCTGCACACGAAAATTGACCTCATTGTAACTCTTGGCGGGGATGGAACTGTCCTTTGGGCTGCGTCAATGTTCAAAGGGCCAGTTCCTCCTGTTGTCCCATTTTCTCTAGGTTCATTGGGCTTTATGACCCCATTTTATAGCGAGCATTACAAGGAATGCCTAAACTCGGTCCTCCGTGGTCCCATTAGTATAACATTACGTCACCGGTTGCAGTGCCATGTAATACGAGAAGCAGCTAAGAACGAATATGAGACAGAGGGGCCTATCCTTGTATTGAATGAGGTTACGATTGATCGGGGAATTTCGTCATTCCTCACAAACTTGGAATGCTATTGTGACAACTCCTTTGTCACATGCGTACAAGGGGATGGTTTGATCTTATCTACAACATCTGGTAGCACTGCTTATTCCCTGGCAGCTGGAGGTTCTATGGTCCATCCACAGGTTCCGGGGATACTGTTTACACCAATATGCCCACACTCATTATCATTCAGGCCACTGATAATGCCGGAGCATGTGACAATAAGGATTCAAGTACCCTTCAACAGCAGAGGGCATGCATGGGCGTCATTCGATGGAAAGGACAGAAAACAGTTGGCACCGGGGGATGCGCTTGTATGCAGCATGGCCCCCTGGCCGGTCCCAACAGCGTGCCAATCGGACTCAACCAGTGACTTCTTGCGTAGTATCCATGATGGCCTCCATTGGAATTTGAGGAAGGTCCAATCTAACGATGGCCCTCACGATCCTTAG

Network for GWHGAAZE008144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01513.22	NAD_kinase	278	573	5.20E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00858	ppnK, NADK	Metabolic pathways	map01100
K00858	ppnK, NADK	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0006741	biological_process	NADP biosynthetic process
GO:0019674	biological_process	NAD metabolic process
GO:0003951	molecular_function	NAD+ kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.459
	SRR3591706	second leaf	8.721
	SRR3591707	mature leaf	11.495
	SRR3591708	Shoot apex	9.557
	SRR3591709	Stem	17.351
	SRR3591710	White floral bud	13.425
	SRR3591711	White flower	16.192
	SRR3591712	Green floral bud	8.483
	SRR3591713	Yellow flower	14.590
SRP173429	SRR8316895	Juvenile bud stage	11.221
	SRR8316896	Juvenile bud stage	18.391
	SRR8316897	Juvenile bud stage	7.331
	SRR8316894	Third green stage	6.596
	SRR8316900	Third green stage	13.351
	SRR8316901	Third green stage	14.807
	SRR8316898	Complete white stage	9.692
	SRR8316899	Complete white stage	20.709
	SRR8316903	Complete white stage	11.342
	SRR8316902	Silver flowering stage	11.507
	SRR8316904	Silver flowering stage	14.639
	SRR8316905	Silver flowering stage	7.993
	SRR8316906	Gold flowering stage	33.013
	SRR8316907	Gold flowering stage	32.900
	SRR8316908	Gold flowering stage	36.928
SRP132670	SRR6706286	Control	15.896
	SRR6706287	Light intensity 50%	16.475
	SRR6706288	Light intensity 20%	17.381
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.598
	CNS0095593	Slightly white alabastrum(diploid) 2	13.831
	CNS0095594	Slightly white alabastrum(diploid) 3	10.661
	CNS0095595	Whole white alabastrum(diploid) 2	9.940
	CNS0095596	Whole white alabastrum(diploid) 3	8.312
	CNS0095597	Whole white alabastrum(diploid) 4	8.233
	CNS0095598	Silvery flower (diploied) 1	12.275
	CNS0095599	Silvery flower (diploied) 2	11.065
	CNS0095600	Silvery flower (diploied) 3	16.684
	CNS0095601	Golden flower (diploid) 1	8.739
	CNS0095602	Golden flower (diploid) 2	15.917
	CNS0095603	Golden flower (diploid) 3	14.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.874
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.977
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.191
	CNS0095610	Silvery flower (tetraploid) 1	17.872
	CNS0095611	Silvery flower (tetraploid) 2	15.261
	CNS0095612	Silvery flower (tetraploid) 3	10.582
	CNS0095613	Golden flower (tetraploid) 1	17.462
	CNS0095614	Golden flower (tetraploid) 2	19.516
	CNS0095615	Golden flower (tetraploid) 3	10.809
CRA001975	CRR073297	Stem 1	13.161
	CRR073298	Stem 2	13.316
	CRR073299	Stem 3	11.430
	CRR073300	Leaf 1	13.423
	CRR073301	Leaf 2	12.879
	CRR073302	Leaf 3	11.939
	CRR073303	Juvenile bud 1	9.852
	CRR073304	Juvenile bud 2	6.247
	CRR073305	Juvenile bud 3	10.255
	CRR073306	Third green 1	4.235
	CRR073307	Third green 2	4.467
	CRR073308	Third green 3	5.793
	CRR073309	Second white 1	5.605
	CRR073310	Second white 2	3.863
	CRR073311	Second white 3	5.641
	CRR073312	Silver flowering 1	4.456
	CRR073313	Silver flowering 2	4.596
	CRR073314	Silver flowering 3	7.701
	CRR073315	Gold flowering 1	8.183
	CRR073316	Gold flowering 2	11.632
	CRR073317	Gold flowering 3	6.908
	CRR073318	Tawny withering 1	12.967
	CRR073319	Tawny withering 2	17.220
	CRR073320	Tawny withering 3	9.102