Gene detail

Detail information of GWHGAAZE008158

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513498.1	0	Translocation protein sec62, putative [Ricinus communis]
trEMBL	tr\|B9RIC9\|B9RIC9_RICCO	0	Translocation protein sec62, putative {ECO:0000313\|EMBL:EEF48901.1}
TAIR10	AT3G20920.1	4E-120	translocation protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62967701	62974176	+
GWHAAZE00000002	mRNA	62967701	62974176	+
GWHAAZE00000002	exon	62967701	62968015	+
GWHAAZE00000002	exon	62969690	62969891	+
GWHAAZE00000002	exon	62972360	62972588	+
GWHAAZE00000002	exon	62973424	62974176	+
GWHAAZE00000002	CDS	62967701	62968015	+
GWHAAZE00000002	CDS	62969690	62969891	+
GWHAAZE00000002	CDS	62972360	62972588	+
GWHAAZE00000002	CDS	62973424	62973691	+
GWHAAZE00000002	three_prime_UTR	62973692	62974176	+

Transcript Sequence
>GWHTAAZE008166 AAAAATGCTGCAAAGAAGGATGTGTTTCAGTTGTTTGCTGAGAAGGTAAGGGATCATAAAAATTTGGTGTCAAGATGGGCTGTTTTACAGGAGACACGCGTTGAATATTTCAAAGGAAAAGATTTTGTTAGCTTTTTGAGAAATCATTCAGAGGTCAAAGACGTACTAGATTCAGATAGGAATCTAGAAGTAGAAGATATTGCCAATGTCCTACTGAGTAAGAATCTTTTAGTGCGCTGTGATCGAGTGGTGAAAACTGTTCGGCCCGGGAAGAGAAAATTGTCTACTTGGCCAGCACATTTAGAGATATTTCCTGATCAAGTGTTTTCTGACAACGATGCATTTTTTGCATGGACGTTTGTGAAAAGAAGGCCGCTGTGGCAAACACTTCTCTCATTTTTCTGGCCTGTGCTGACTCTTGCAATCTGCTTGTTTCCTGTATATCCTCACCGGTGCAAGCTACTCATACTATACTCGTGTGCTGGGCTCCTCCTCCTTATCCTTTGCCTTCTTTCATTGAGAGCTTTAATCTTTGGCACCGTATGGATTCTTGTTGGGAAGCGTGTGTGGTTCTTCCCCAACATCCTAGCAGAGGAAGCAACACTTGGGGAACTATTCCGTTTTTGGCCCAAGAAAGACGAGGAGGAACCACCAAAGTGGACAGCAAGGCTTTTCTATGCAATAGTGGCTGCACTGGTTATATTACTATTGAGGCATCATGCCCCTGATGAGGCTGCTCGAGCCAGGTATCAAAGGCGGGTATCCAACATAATCGACGATGTTCTGGAGTGGTCTCCGAGGTTGGCGTTATCGGGGATGATGGAGAAGCAACAAACCGTGGTCAATGAAACGGACCCCAGTGCCAATTTCACTGACGGGTCCAACGTCAGATCTGAAGACGACACGGCATCTCCGTATCCGCCTTCCGATGATGCAGATGAAGAAACCATTTCAGAGCAACAAGAGGTTGATGAAGATAATCATCATAGTCAAGACCATCATAGTGATATATGATACTATTATACAGATGTAACTGGAGAGTGGACAACATATTTTTACCCTTTTTTTGGTTTTGTTACAAGGAAAAATTATGTATTTGGTGGTTCTTTCATAGAATGTGTAGTTTAGAGTTATGTAATCAGATCGCGAGAATAAATTGTTCGGTTTTCTAAATTCTCTTCCGCCCTTTTGGACCCAGGGAAACTCCACTTAATTCAGAGCTTATTTTTGCGTGTGAGAGAGATATCACAGACGGGGGGCTCCGATTCCTTTCCGGTCCTTTGATTTGATCCATGGAAACTAAGGACTTGTATTCAATTCAGGGCACGTGCATATATGTATACATAAGATATTAAATTTTAAAATAGAAAGTAAGTTTGTAATTGTTAACATCGATTAAATTGAATTTAGTATTTTATTTTTGATATATGACAAAAAAAAGTAAAAATGACACTAAACTTTTTAGAAGCTGATAGATTTACCTCTCTGAATTTTTATTT

Network for GWHGAAZE008158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03839.17	Sec62	76	198	3.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12275	SEC62	Protein export	map03060
K12275	SEC62	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0030176	cellular_component	integral component of endoplasmic reticulum membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.256
	SRR3591706	second leaf	21.849
	SRR3591707	mature leaf	21.300
	SRR3591708	Shoot apex	30.519
	SRR3591709	Stem	43.304
	SRR3591710	White floral bud	161.997
	SRR3591711	White flower	92.407
	SRR3591712	Green floral bud	57.622
	SRR3591713	Yellow flower	62.839
SRP173429	SRR8316895	Juvenile bud stage	24.668
	SRR8316896	Juvenile bud stage	34.387
	SRR8316897	Juvenile bud stage	15.240
	SRR8316894	Third green stage	12.315
	SRR8316900	Third green stage	60.010
	SRR8316901	Third green stage	53.537
	SRR8316898	Complete white stage	130.442
	SRR8316899	Complete white stage	108.964
	SRR8316903	Complete white stage	139.668
	SRR8316902	Silver flowering stage	58.171
	SRR8316904	Silver flowering stage	65.519
	SRR8316905	Silver flowering stage	33.299
	SRR8316906	Gold flowering stage	79.412
	SRR8316907	Gold flowering stage	83.703
	SRR8316908	Gold flowering stage	84.939
SRP132670	SRR6706286	Control	43.946
	SRR6706287	Light intensity 50%	46.513
	SRR6706288	Light intensity 20%	47.198
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.468
	CNS0095593	Slightly white alabastrum(diploid) 2	44.015
	CNS0095594	Slightly white alabastrum(diploid) 3	38.578
	CNS0095595	Whole white alabastrum(diploid) 2	49.732
	CNS0095596	Whole white alabastrum(diploid) 3	50.438
	CNS0095597	Whole white alabastrum(diploid) 4	55.342
	CNS0095598	Silvery flower (diploied) 1	49.406
	CNS0095599	Silvery flower (diploied) 2	48.423
	CNS0095600	Silvery flower (diploied) 3	90.345
	CNS0095601	Golden flower (diploid) 1	35.637
	CNS0095602	Golden flower (diploid) 2	57.282
	CNS0095603	Golden flower (diploid) 3	54.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.562
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.101
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.455
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.146
	CNS0095610	Silvery flower (tetraploid) 1	80.113
	CNS0095611	Silvery flower (tetraploid) 2	73.957
	CNS0095612	Silvery flower (tetraploid) 3	191.604
	CNS0095613	Golden flower (tetraploid) 1	44.498
	CNS0095614	Golden flower (tetraploid) 2	52.323
	CNS0095615	Golden flower (tetraploid) 3	55.819
CRA001975	CRR073297	Stem 1	29.475
	CRR073298	Stem 2	30.051
	CRR073299	Stem 3	33.881
	CRR073300	Leaf 1	51.003
	CRR073301	Leaf 2	52.668
	CRR073302	Leaf 3	61.986
	CRR073303	Juvenile bud 1	89.663
	CRR073304	Juvenile bud 2	107.730
	CRR073305	Juvenile bud 3	77.373
	CRR073306	Third green 1	208.138
	CRR073307	Third green 2	183.350
	CRR073308	Third green 3	176.047
	CRR073309	Second white 1	133.333
	CRR073310	Second white 2	103.336
	CRR073311	Second white 3	71.683
	CRR073312	Silver flowering 1	44.053
	CRR073313	Silver flowering 2	42.363
	CRR073314	Silver flowering 3	47.575
	CRR073315	Gold flowering 1	18.623
	CRR073316	Gold flowering 2	20.666
	CRR073317	Gold flowering 3	17.293
	CRR073318	Tawny withering 1	36.394
	CRR073319	Tawny withering 2	38.029
	CRR073320	Tawny withering 3	44.999