Gene detail

Detail information of GWHGAAZE008164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768441.1	0	PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Nicotiana sylvestris]
Swissprot	tr\|Q70E96\|AL3F1_ARATH	0	Aldehyde dehydrogenase family 3 member F1
trEMBL	tr\|D7SL57\|D7SL57_VITVI	0	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}
TAIR10	AT4G36250.1	7E-149	aldehyde dehydrogenase 3F1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63107781	63125984	+
GWHAAZE00000002	mRNA	63107781	63125984	+
GWHAAZE00000002	exon	63107781	63107981	+
GWHAAZE00000002	exon	63111991	63112059	+
GWHAAZE00000002	exon	63114798	63114894	+
GWHAAZE00000002	exon	63115520	63115726	+
GWHAAZE00000002	exon	63116447	63116571	+
GWHAAZE00000002	exon	63122353	63122457	+
GWHAAZE00000002	exon	63123082	63123254	+
GWHAAZE00000002	exon	63123835	63123925	+
GWHAAZE00000002	exon	63124466	63124615	+
GWHAAZE00000002	exon	63125742	63125984	+
GWHAAZE00000002	CDS	63107781	63107981	+
GWHAAZE00000002	CDS	63111991	63112059	+
GWHAAZE00000002	CDS	63114798	63114894	+
GWHAAZE00000002	CDS	63115520	63115726	+
GWHAAZE00000002	CDS	63116447	63116571	+
GWHAAZE00000002	CDS	63122353	63122457	+
GWHAAZE00000002	CDS	63123082	63123254	+
GWHAAZE00000002	CDS	63123835	63123925	+
GWHAAZE00000002	CDS	63124466	63124615	+
GWHAAZE00000002	CDS	63125742	63125984	+

Transcript Sequence
>GWHTAAZE008172 ATGGAAGGTGTGAAGAAGGATTTGGAAGGAGAGTTGGAGGAGCTAAGAGAGACTTATAACTGTGGGAAGACAAAAGAAGAAACTTGGAGGAGGTCTCAGCTAAAAGGTTTGCTCACTCTCCTCAAGGAAAAAGAAGATGACATTTTCAAGGCTCTTAAACAAGATTTGGGGAAACATCAAGCTGAGGCCTATAGAGATGAGATTGGAGCTTTAGTAAAATCTGTAAATTATGCACTGGCAAACTTGAAGAAATGGATGTCAAGCAAAAAAGCTGGATTGCCATTGGCTGTATTTCCTTCAACAGCAGAATTGGTTCCTGAACCTCTTGGTCTTGTCCTCATTATCTCTTCTTGGAATTTCCCCTTTGGGTTATCAATTGAGCCATTGATAGGAGCAATAGCAGCTGGAAATGTAGTGGTGATTAAACCCTCAGAGCTAGCTCCAGCATCTGCCTCTATTCTTGCAACAGCTATTCATACTTACCTTGACAATAGAGCTGTCAAAGTTATCCAAGGTGGAATCTCTGTGGGTCAACAACTTTTGCAACACAAATGGGACAAGATTTTCTTCACAGGTAGTGCACACGTGGGGCGAATTGTTTTGTCTGCAGCCATTAAGCATCTGACACCTGTCACTCTTGAATTGGGAGGGAAATGTCCCGCTGTGGTTGATTCCCTCTCTTCTACTTGGGATAAAGAGATTGCAGCAAAAAGAATTATTTCTGCGAAATTTGGGACCTGTGCTGGTCAAGCATGCATAGGAATTGATTATATCCTTGCAGAGAAAAGATTTACTTCTAACTTGGTGGAACTATTAAAGTTGTACACGAAGCAAATGTTTGGAGAAAATCCAAAAGAAACAAATAGTATTGCAAGGATAATTAACAAAACTAATTTCTTGAGGCTCAAAAAACTATTGGAAGAACCTATGGTCAAAACCTCTATTGTTCATGGTGGTTCATTAGATGAAGATAATTTGTTCATTGAGCCAACTATCTTGGTGGATCCACCACTCAATTCTACACTCATGACAGAGGAGATCTTTGGCCCGTTGCTTCCCATAATTACGGTGGACAAAATTGAAGAGAGCATTGACTTTATAAAGTCAAGGCCAAAGGCACTTGCAATCTATGCCTTCACTTGCAATCAAACACTCAAAGAAAGGTTATTATCAGAGACATCTTCTGGAAGTGTCACCTTCAACGACACTATAGTTCAATATGCAGCCGATACTCTCCCATTTGGAGGAATTGGGGGAAGCGGATTTGGTAGATATCACGGAAAATTCTCATTCGATACCTTCACTCACGAGAAGGCAGTTGTGAAAAGAGCTGATCTTCTCTTCGATATTTGGTTTCGGTATCCTCCGTGGAATGACAAGAAATTGATGCTTCTCAAATCAGCTTACAGATTTGATTATCTTGGAGTTCTTTTGACAGCACTAGGCTTGAAGAAATCTTGA

Network for GWHGAAZE008164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	29	440	1.50E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006081	biological_process	cellular aldehyde metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.238
	SRR3591706	second leaf	45.637
	SRR3591707	mature leaf	49.374
	SRR3591708	Shoot apex	50.702
	SRR3591709	Stem	15.769
	SRR3591710	White floral bud	16.953
	SRR3591711	White flower	17.241
	SRR3591712	Green floral bud	40.368
	SRR3591713	Yellow flower	4.598
SRP173429	SRR8316895	Juvenile bud stage	34.361
	SRR8316896	Juvenile bud stage	40.438
	SRR8316897	Juvenile bud stage	28.151
	SRR8316894	Third green stage	15.025
	SRR8316900	Third green stage	35.337
	SRR8316901	Third green stage	31.356
	SRR8316898	Complete white stage	2.952
	SRR8316899	Complete white stage	37.801
	SRR8316903	Complete white stage	5.960
	SRR8316902	Silver flowering stage	2.044
	SRR8316904	Silver flowering stage	2.607
	SRR8316905	Silver flowering stage	0.512
	SRR8316906	Gold flowering stage	2.202
	SRR8316907	Gold flowering stage	1.659
	SRR8316908	Gold flowering stage	5.822
SRP132670	SRR6706286	Control	6.615
	SRR6706287	Light intensity 50%	7.204
	SRR6706288	Light intensity 20%	9.858
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.938
	CNS0095593	Slightly white alabastrum(diploid) 2	17.658
	CNS0095594	Slightly white alabastrum(diploid) 3	17.521
	CNS0095595	Whole white alabastrum(diploid) 2	12.719
	CNS0095596	Whole white alabastrum(diploid) 3	6.678
	CNS0095597	Whole white alabastrum(diploid) 4	11.672
	CNS0095598	Silvery flower (diploied) 1	38.532
	CNS0095599	Silvery flower (diploied) 2	24.103
	CNS0095600	Silvery flower (diploied) 3	9.198
	CNS0095601	Golden flower (diploid) 1	24.046
	CNS0095602	Golden flower (diploid) 2	19.048
	CNS0095603	Golden flower (diploid) 3	19.428
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.231
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.919
	CNS0095610	Silvery flower (tetraploid) 1	14.016
	CNS0095611	Silvery flower (tetraploid) 2	8.949
	CNS0095612	Silvery flower (tetraploid) 3	4.162
	CNS0095613	Golden flower (tetraploid) 1	2.656
	CNS0095614	Golden flower (tetraploid) 2	4.483
	CNS0095615	Golden flower (tetraploid) 3	3.978
CRA001975	CRR073297	Stem 1	29.181
	CRR073298	Stem 2	28.305
	CRR073299	Stem 3	17.977
	CRR073300	Leaf 1	24.277
	CRR073301	Leaf 2	22.338
	CRR073302	Leaf 3	22.114
	CRR073303	Juvenile bud 1	13.892
	CRR073304	Juvenile bud 2	2.068
	CRR073305	Juvenile bud 3	9.410
	CRR073306	Third green 1	0.772
	CRR073307	Third green 2	0.164
	CRR073308	Third green 3	0.703
	CRR073309	Second white 1	0.188
	CRR073310	Second white 2	0.436
	CRR073311	Second white 3	0.178
	CRR073312	Silver flowering 1	0.355
	CRR073313	Silver flowering 2	1.479
	CRR073314	Silver flowering 3	0.689
	CRR073315	Gold flowering 1	28.128
	CRR073316	Gold flowering 2	22.195
	CRR073317	Gold flowering 3	21.326
	CRR073318	Tawny withering 1	2.268
	CRR073319	Tawny withering 2	6.095
	CRR073320	Tawny withering 3	1.903