Gene detail

Detail information of GWHGAAZE008165

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010247189.1	PREDICTED: origin recognition complex subunit 1-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q710E8\|ORC1A_ARATH	Origin of replication complex subunit 1A {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A0A067JRC8\|A0A067JRC8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP22084.1}
TAIR10	AT4G12620.1	origin of replication complex 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63188002	63197159	+
GWHAAZE00000002	mRNA	63188002	63197159	+
GWHAAZE00000002	exon	63188002	63188792	+
GWHAAZE00000002	exon	63189327	63189459	+
GWHAAZE00000002	exon	63190199	63190351	+
GWHAAZE00000002	exon	63190436	63190576	+
GWHAAZE00000002	exon	63190650	63190801	+
GWHAAZE00000002	exon	63191083	63191182	+
GWHAAZE00000002	exon	63191424	63191546	+
GWHAAZE00000002	exon	63191651	63191765	+
GWHAAZE00000002	exon	63192736	63192914	+
GWHAAZE00000002	exon	63193048	63193162	+
GWHAAZE00000002	exon	63193867	63193937	+
GWHAAZE00000002	exon	63194184	63194279	+
GWHAAZE00000002	exon	63194912	63194988	+
GWHAAZE00000002	exon	63196104	63196187	+
GWHAAZE00000002	exon	63197096	63197159	+
GWHAAZE00000002	CDS	63188002	63188792	+
GWHAAZE00000002	CDS	63189327	63189459	+
GWHAAZE00000002	CDS	63190199	63190351	+
GWHAAZE00000002	CDS	63190436	63190576	+
GWHAAZE00000002	CDS	63190650	63190801	+
GWHAAZE00000002	CDS	63191083	63191182	+
GWHAAZE00000002	CDS	63191424	63191546	+
GWHAAZE00000002	CDS	63191651	63191765	+
GWHAAZE00000002	CDS	63192736	63192914	+
GWHAAZE00000002	CDS	63193048	63193162	+
GWHAAZE00000002	CDS	63193867	63193937	+
GWHAAZE00000002	CDS	63194184	63194279	+
GWHAAZE00000002	CDS	63194912	63194988	+
GWHAAZE00000002	CDS	63196104	63196187	+
GWHAAZE00000002	CDS	63197096	63197159	+

Transcript Sequence
>GWHTAAZE008173 ATGGCCGAAACCCCAAAGAAACCCAAGAAACAAACCCCTCAAAAAAACCCTAATAAACCCACCTCCCATTCTTCCTTAACCCCTCCCACCCCACAAACCCTAGCCCCTGTCCGCCGCTCTTCCCGCCTCATTTCCTCGCCCGATCCACCTCTCCCGCCAACACGGTCGGTCAATCAAACATCGTTGGACTTCAATCACAAAACCCCCAAACAATCAATTAACCAGCAAACCCCTAAATCCGCCAAAAATGCCCCAAGGTCAAAGCGTAGAATTAGTACCGATCCGGTCGAGGTTTCGTTATCCCCATTGTACCCGTTGTCCCCTGATCGATCCGAGGTGAAGAAAAAGAGGAAATGTAAGGGATCCAATTTGGATACACCGAATACTAGGGTTAGGGTTTTGAGAAATGCGAAATTACCCAAGAGGAAGGTGTACTTTAAGAAGGTGTCTTATGATGGGGGTGAGTTTTCGGTGGGGGACGATGTTTATGTGAAGAGGAGAGAGGATGCTAGTTCTGATGAAGAGGATCCGGAAATTGAGGAATGTAGGGTTTGTTTTAAGGCGGGGAGGGCTATTATGGTTGAGTGTGATGACTGTTTAGGCGGGTTTCATCTCAAATGTTTGAAACCGCCGCTTAAGACTGTGCCTGAAGGGGATTGGATTTGTGGGTTTTGCGAGGCGAAGAAATTGGGGAAGAACGTTCAGTTGCCAATTCCCAAGGGGAAGAAATTGGTTAGGACTGCGAAGGAGAAGCTTCTCTCCAGCGACTTGTGGGCAGCTCACATTGAGAGCATATGGAAAGAGGTGGATGGTAGCTTTTGGTTTTGGGGCTGGTATATAATTCCTGAAGAAACTGCAGCTGGAAGGCAGCCACATAATTTGAAAAGGGAGCTTTATCGGACAAATGACTTCTCGAACATTGAGATGGAATCAGTCCTTAGGCATTGCTATGTTATGAACCCTAAAGAATTTACCAAGGCTAACAATGAAGGTGATGACGTTTTCCTGTGCGAATATGAGTATGATGTACACTGGCATAGTTTCAAGCGCATTGCTGAAATTGATAATGGTGAAGAGGATAGTGAAGAAGCTGACAGTGATGAAGATTGGAATGCTCGCAAAGATTCAGACTCTGACACTGACGAATACGTTGGATATGAAGAAGAAAACATAGCTAATTTATTCAAAGAATTGTCCCCAGCTCAAAAGTTGTCTGCGAATTCGCGAAAGGGTCGAATCTTTGGACTTCAAAAAATAGGGATGAAGAAGATTCCAGAACATGTGAGATGCCGCAAGCAAACTGAAATTGAGAAAGCAAAAGCAACACTTCTACTGGCAACTTTGCCCAAGTCTCTGCCTTGTAGAAATAAAGAGACGGAAGAGATCACTACATTCATAAAAGATTCCATATGCAATGATCAATGTCTAGGACGCTGCCTCTACATTCATGGTGTTCCTGGTACTGGCAAGACAATGAGTGTACTTGCAGTGATGAGGAACTTACGGTCTGAAGCCGATGCTGGTAGCATTAAGCCTTACTGTTTTGTGGAGATTAATGGCCTAAAGTTGGCCTCACCTGAGAATATATATACGGTTATTTATGAAGCATTAAGTGGACACAGGGTTAGCTGGAAAAAGGCTCTTCATTTGCTGAATGAGCGTTTTTCGAATGGAACCCAAAGTGGCAAAAAGGAGGACAACCAACCTTGGATAGCAAATACAATGGATCTTCCAGAGAAGTTGCTTCCGCGTATTTCAAGCCGAATGGGCATGCAAAGGCTTTGCTTTGCTCCCTATAATTATCTGCAGCTTCAAGAAATCATTTCAACTCGCCTTAAAGGAATTGACGCGTTCGAGAACCAAGCTATAGAATATGCTTCAAGGAAGGTGGCAGCTGTTTCGGGAGATGCACGTCGTGCACTCGAGATTTGTAGAAGAGCTGCAGAAATTGCGGATTATCGTATTAAGAAATTAAACCCGCTTCCTGATTCTGCTTCTGCAGGAAAAGCTCTTGTTGGTATGGCGGAGGTTGAAGCAGCTATACAGGAGATGTTCCAAGCTCCTCATATTCAAGTAATGAGGAGTTGCTCCAAACTGAGTAAGATCTTCTTGACAGCTATGGTGCATGAGCTGTATAAAACAGGAATGAGTGAAACCACCTTTGAAAAGTTGGCGAAGACTGTTTCAGCTCTTTGTACAAGCAACGGAGAAGCATTTCCTGGATGGGACACACTTCTGAGAGCTGGGTGTAAGCTTGGGGAATGCAGAATCATTCTATGTGAAGCAGGAGTTAGGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCGAGTGATGATGTGAGCTTTGCACTGAAAGACAGCAAGGAGCTTACTTGGTTGGCCAAATACTTGTGA

Network for GWHGAAZE008165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	182	227	1.40E-08
PF01426.19	BAH	262	350	8.80E-08
PF00004.30	AAA	481	543	0.00011
PF17872.2	AAA_lid_10	618	652	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
K02603	ORC1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.366
	SRR3591706	second leaf	2.402
	SRR3591707	mature leaf	0.426
	SRR3591708	Shoot apex	23.942
	SRR3591709	Stem	2.882
	SRR3591710	White floral bud	0.474
	SRR3591711	White flower	0.314
	SRR3591712	Green floral bud	1.210
	SRR3591713	Yellow flower	0.088
SRP173429	SRR8316895	Juvenile bud stage	3.478
	SRR8316896	Juvenile bud stage	3.962
	SRR8316897	Juvenile bud stage	2.103
	SRR8316894	Third green stage	1.124
	SRR8316900	Third green stage	2.100
	SRR8316901	Third green stage	1.679
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.452
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.098
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.128
	SRR8316907	Gold flowering stage	0.116
	SRR8316908	Gold flowering stage	0.066
SRP132670	SRR6706286	Control	0.896
	SRR6706287	Light intensity 50%	1.771
	SRR6706288	Light intensity 20%	1.559
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.425
	CNS0095593	Slightly white alabastrum(diploid) 2	1.628
	CNS0095594	Slightly white alabastrum(diploid) 3	2.969
	CNS0095595	Whole white alabastrum(diploid) 2	2.098
	CNS0095596	Whole white alabastrum(diploid) 3	1.660
	CNS0095597	Whole white alabastrum(diploid) 4	1.374
	CNS0095598	Silvery flower (diploied) 1	1.085
	CNS0095599	Silvery flower (diploied) 2	1.244
	CNS0095600	Silvery flower (diploied) 3	0.714
	CNS0095601	Golden flower (diploid) 1	0.732
	CNS0095602	Golden flower (diploid) 2	0.239
	CNS0095603	Golden flower (diploid) 3	0.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.653
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.278
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.215
	CNS0095610	Silvery flower (tetraploid) 1	0.269
	CNS0095611	Silvery flower (tetraploid) 2	0.375
	CNS0095612	Silvery flower (tetraploid) 3	0.175
	CNS0095613	Golden flower (tetraploid) 1	0.105
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.088
CRA001975	CRR073297	Stem 1	5.487
	CRR073298	Stem 2	4.019
	CRR073299	Stem 3	4.530
	CRR073300	Leaf 1	1.067
	CRR073301	Leaf 2	1.225
	CRR073302	Leaf 3	0.632
	CRR073303	Juvenile bud 1	0.351
	CRR073304	Juvenile bud 2	0.262
	CRR073305	Juvenile bud 3	0.313
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.040
	CRR073308	Third green 3	0.248
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.091
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.604
	CRR073316	Gold flowering 2	0.462
	CRR073317	Gold flowering 3	0.098
	CRR073318	Tawny withering 1	4.470
	CRR073319	Tawny withering 2	4.119
	CRR073320	Tawny withering 3	7.193