Gene detail

Detail information of GWHGAAZE008167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009769401.1	1.4811E-107	PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Nicotiana sylvestris]
Swissprot	tr\|Q8L649\|BB_ARATH	4E-57	E3 ubiquitin ligase BIG BROTHER
trEMBL	tr\|D7SL69\|D7SL69_VITVI	2E-107	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16397.3}
TAIR10	AT3G63530.2	2E-40	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63265223	63269526	-
GWHAAZE00000002	mRNA	63265223	63269526	-
GWHAAZE00000002	exon	63265223	63265331	-
GWHAAZE00000002	exon	63266458	63266585	-
GWHAAZE00000002	exon	63267424	63267468	-
GWHAAZE00000002	exon	63267638	63267669	-
GWHAAZE00000002	exon	63268939	63269173	-
GWHAAZE00000002	exon	63269386	63269526	-
GWHAAZE00000002	CDS	63269386	63269526	-
GWHAAZE00000002	CDS	63268939	63269173	-
GWHAAZE00000002	CDS	63267638	63267669	-
GWHAAZE00000002	CDS	63267424	63267468	-
GWHAAZE00000002	CDS	63266458	63266585	-
GWHAAZE00000002	CDS	63265223	63265331	-

Transcript Sequence
>GWHTAAZE008175 ATGAGTTGGAACCGACAACCAGAAGTTCATTACATTAACTCTGGCTTACCTTATAGTTCTAGTGGGAGCTTTATGGATTTCTTCGAGAGTCTAACATATGAGCATGTGAATTTCATCTTCGCTGATCCTCCTTATTCTCAGGAGACTACATACCCTTCAATGAACACCAATTTATACAAATTTGGGCTATCTGAACCTGGGGGTGTGTCATATTATGATTACAATAATGCCTATGTGGTTGGCGAAACCTCAGTGGTTGATGGACACAGTAGGCGTATGGAGAACTCTTCAGCAATAGCTGATGAGCAGACCACAGCTGTACATACACACCAAGAAGGGAATTCAAACTCAACTTCACAAGCTACTCGGGTAGATTGTCCGCGGAGTCATACTGCTCGTGATTATCAGGCTGTTTGGCAAGACAATGTTGATCCTGACAGCATGACATATGAGGAATTACTCGAGTTAGGTGAGGTAGTTGGAACTGAAAGCCGTGGTCTTTCCCAAGAACTCATTTCCTTGCTCCCAATCTCCAAGTTCAAGTGTGGCTTCTTCTTGAGAAAGAAATCAAGAGATGAGAGGTGCGTGATTTGCCAGATGGAATATAAACGACGAGACCGGCAGATTACTCTTCCCTGCAAACATGCCTACCATGCTGGTTGTGGCAGCAGATGGCTTAGCATCAATAAG

Network for GWHGAAZE008167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	194	229	2.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0032259	biological_process	methylation
GO:0003676	molecular_function	nucleic acid binding
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.872
	SRR3591706	second leaf	28.429
	SRR3591707	mature leaf	30.998
	SRR3591708	Shoot apex	31.912
	SRR3591709	Stem	33.266
	SRR3591710	White floral bud	29.735
	SRR3591711	White flower	5.818
	SRR3591712	Green floral bud	52.002
	SRR3591713	Yellow flower	0.367
SRP173429	SRR8316895	Juvenile bud stage	17.400
	SRR8316896	Juvenile bud stage	24.874
	SRR8316897	Juvenile bud stage	19.528
	SRR8316894	Third green stage	10.872
	SRR8316900	Third green stage	26.135
	SRR8316901	Third green stage	34.672
	SRR8316898	Complete white stage	13.817
	SRR8316899	Complete white stage	52.430
	SRR8316903	Complete white stage	18.952
	SRR8316902	Silver flowering stage	7.966
	SRR8316904	Silver flowering stage	6.191
	SRR8316905	Silver flowering stage	2.776
	SRR8316906	Gold flowering stage	5.595
	SRR8316907	Gold flowering stage	3.341
	SRR8316908	Gold flowering stage	3.045
SRP132670	SRR6706286	Control	15.729
	SRR6706287	Light intensity 50%	18.884
	SRR6706288	Light intensity 20%	23.370
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.946
	CNS0095593	Slightly white alabastrum(diploid) 2	40.038
	CNS0095594	Slightly white alabastrum(diploid) 3	41.236
	CNS0095595	Whole white alabastrum(diploid) 2	25.840
	CNS0095596	Whole white alabastrum(diploid) 3	24.710
	CNS0095597	Whole white alabastrum(diploid) 4	22.314
	CNS0095598	Silvery flower (diploied) 1	5.327
	CNS0095599	Silvery flower (diploied) 2	6.636
	CNS0095600	Silvery flower (diploied) 3	3.998
	CNS0095601	Golden flower (diploid) 1	1.965
	CNS0095602	Golden flower (diploid) 2	1.790
	CNS0095603	Golden flower (diploid) 3	2.574
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.161
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.712
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.623
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.304
	CNS0095610	Silvery flower (tetraploid) 1	4.847
	CNS0095611	Silvery flower (tetraploid) 2	2.287
	CNS0095612	Silvery flower (tetraploid) 3	2.557
	CNS0095613	Golden flower (tetraploid) 1	1.178
	CNS0095614	Golden flower (tetraploid) 2	0.504
	CNS0095615	Golden flower (tetraploid) 3	1.096
CRA001975	CRR073297	Stem 1	38.117
	CRR073298	Stem 2	34.549
	CRR073299	Stem 3	33.766
	CRR073300	Leaf 1	40.966
	CRR073301	Leaf 2	44.337
	CRR073302	Leaf 3	55.433
	CRR073303	Juvenile bud 1	30.621
	CRR073304	Juvenile bud 2	32.845
	CRR073305	Juvenile bud 3	25.138
	CRR073306	Third green 1	3.561
	CRR073307	Third green 2	4.803
	CRR073308	Third green 3	3.696
	CRR073309	Second white 1	1.836
	CRR073310	Second white 2	2.683
	CRR073311	Second white 3	0.464
	CRR073312	Silver flowering 1	0.406
	CRR073313	Silver flowering 2	0.442
	CRR073314	Silver flowering 3	0.120
	CRR073315	Gold flowering 1	24.641
	CRR073316	Gold flowering 2	23.265
	CRR073317	Gold flowering 3	20.524
	CRR073318	Tawny withering 1	47.203
	CRR073319	Tawny withering 2	25.614
	CRR073320	Tawny withering 3	56.727