Detail information of GWHGAAZE008175


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADO51752.10lipoxygenase [Camellia sinensis]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|E3UIM5|E3UIM5_CAMSI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.10lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6394183063949857-
GWHAAZE00000002mRNA6394183063949857-
GWHAAZE00000002exon6394183063942101-
GWHAAZE00000002exon6394268763943027-
GWHAAZE00000002exon6394372363943944-
GWHAAZE00000002exon6394478663945087-
GWHAAZE00000002exon6394593163946041-
GWHAAZE00000002exon6394643463946519-
GWHAAZE00000002exon6394660863946769-
GWHAAZE00000002exon6394685563946919-
GWHAAZE00000002exon6394711663947238-
GWHAAZE00000002exon6394804663948364-
GWHAAZE00000002exon6394941963949479-
GWHAAZE00000002exon6394957063949857-
GWHAAZE00000002CDS6394957063949857-
GWHAAZE00000002CDS6394941963949479-
GWHAAZE00000002CDS6394804663948364-
GWHAAZE00000002CDS6394711663947238-
GWHAAZE00000002CDS6394685563946919-
GWHAAZE00000002CDS6394660863946769-
GWHAAZE00000002CDS6394643463946519-
GWHAAZE00000002CDS6394593163946041-
GWHAAZE00000002CDS6394478663945087-
GWHAAZE00000002CDS6394372363943944-
GWHAAZE00000002CDS6394268763943027-
GWHAAZE00000002CDS6394183063942101-
Transcript Sequence

Network for GWHGAAZE008175

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0044


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1402022.30E-07
PF00305.20Lipoxygenase2202853.00E-13
PF00305.20Lipoxygenase2837721.90E-217
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005515molecular_functionprotein binding
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.664
SRR3591706second leaf3.201
SRR3591707mature leaf0.939
SRR3591708Shoot apex11.500
SRR3591709Stem1.518
SRR3591710White floral bud40.843
SRR3591711White flower28.787
SRR3591712Green floral bud63.198
SRR3591713Yellow flower11.779
SRP173429 SRR8316895Juvenile bud stage 46.565
SRR8316896Juvenile bud stage 65.607
SRR8316897Juvenile bud stage 7.534
SRR8316894Third green stage 23.709
SRR8316900Third green stage 22.058
SRR8316901Third green stage 21.942
SRR8316898Complete white stage 2.355
SRR8316899Complete white stage 2.830
SRR8316903Complete white stage 3.610
SRR8316902Silver flowering stage1.654
SRR8316904Silver flowering stage1.530
SRR8316905Silver flowering stage1.090
SRR8316906Gold flowering stage 1.162
SRR8316907Gold flowering stage 3.830
SRR8316908Gold flowering stage 0.680
SRP132670SRR6706286Control47.559
SRR6706287Light intensity 50%37.085
SRR6706288Light intensity 20%30.048
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.413
CNS0095593Slightly white alabastrum(diploid) 24.717
CNS0095594Slightly white alabastrum(diploid) 39.403
CNS0095595Whole white alabastrum(diploid) 24.078
CNS0095596Whole white alabastrum(diploid) 34.634
CNS0095597Whole white alabastrum(diploid) 42.679
CNS0095598Silvery flower (diploied) 115.956
CNS0095599Silvery flower (diploied) 25.496
CNS0095600Silvery flower (diploied) 35.375
CNS0095601Golden flower (diploid) 110.894
CNS0095602Golden flower (diploid) 211.524
CNS0095603Golden flower (diploid) 310.625
CNS0095604Slightly white alabastrum(tetraploid) 18.548
CNS0095605Slightly white alabastrum(tetraploid) 28.680
CNS0095606Slightly white alabastrum(tetraploid) 322.870
CNS0095607Whole white alabastrum(tetraploid) 10.747
CNS0095608Whole white alabastrum(tetraploid) 20.150
CNS0095609Whole white alabastrum(tetraploid) 38.367
CNS0095610Silvery flower (tetraploid) 11.610
CNS0095611Silvery flower (tetraploid) 24.095
CNS0095612Silvery flower (tetraploid) 35.679
CNS0095613Golden flower (tetraploid) 10.489
CNS0095614Golden flower (tetraploid) 20.592
CNS0095615Golden flower (tetraploid) 33.915
CRA001975CRR073297Stem 1105.470
CRR073298Stem 299.818
CRR073299Stem 369.410
CRR073300Leaf 112.064
CRR073301Leaf 220.428
CRR073302Leaf 318.741
CRR073303Juvenile bud 11.364
CRR073304Juvenile bud 26.871
CRR073305Juvenile bud 32.677
CRR073306Third green 10.831
CRR073307Third green 20.407
CRR073308Third green 31.086
CRR073309Second white 10.507
CRR073310Second white 20.176
CRR073311Second white 30.207
CRR073312Silver flowering 10.025
CRR073313Silver flowering 20.054
CRR073314Silver flowering 30.075
CRR073315Gold flowering 10.212
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.375
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.037
CRR073320Tawny withering 30.000