Gene detail

Detail information of GWHGAAZE008177

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADO51752.1	3.1898E-177	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	4E-164	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|E3UIM5\|E3UIM5_CAMSI	1E-177	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	3E-124	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	64136233	64141762	-
GWHAAZE00000002	mRNA	64136233	64141762	-
GWHAAZE00000002	exon	64136233	64136651	-
GWHAAZE00000002	exon	64137272	64137323	-
GWHAAZE00000002	exon	64137414	64137612	-
GWHAAZE00000002	exon	64138795	64139058	-
GWHAAZE00000002	exon	64140177	64140186	-
GWHAAZE00000002	exon	64140253	64140355	-
GWHAAZE00000002	exon	64141330	64141440	-
GWHAAZE00000002	exon	64141751	64141762	-
GWHAAZE00000002	CDS	64141751	64141762	-
GWHAAZE00000002	CDS	64141330	64141440	-
GWHAAZE00000002	CDS	64140253	64140355	-
GWHAAZE00000002	CDS	64140177	64140186	-
GWHAAZE00000002	CDS	64138795	64139058	-
GWHAAZE00000002	CDS	64137414	64137612	-
GWHAAZE00000002	CDS	64137272	64137323	-
GWHAAZE00000002	CDS	64136233	64136651	-

Transcript Sequence
>GWHTAAZE008185 ATGCTCTACAAGGAATGGCCATTGAGAAGTAAGCTGGACCCTGAGGTGTATGGACCACCTGAATCAGCCATCACCAAAGAGATTGTGGAGGAACAGATAAAAGATTTCCTGACCTTTGAAGAGCCTACCGAAGAGTTGATGCCGATAGCCATCGAGTTAACTCGACCACCAGCTAATAAGAAACCTCAATGGAAACAAGTGTTTACGCCCTCCTCAGATGCTACAGTTAGTCATTGGCTAAGAACACATTGTGTGACAAAGCCTTACATAACTGCGAGCAACCGTCAACTTAGTGCAATGCACTCGATCTATAGACTTTTTCACCCTCATTTTCGGTATACAATGGCGATTAATGCCGAAGCTCGGCAATCACTCATAAATGCAAATGGAATCATCGAGATGGGATTTTCACCTGGAAAGTACTCTATGGAGCTAAGCTCTATTGCCTACGACCAGTGGAACTTTCTTTTCCAGGGACTTCCAACGGATTTATTAGTTAGGGGAATGGCTAAAGAAGATTCAACTACTTCGCATGGCCTACAGCTTGCAATTGAAGACTATCCCTTTGCTAGCGATGGTTTAATCCTTTGGGATGCGATTAAAGAATGGGTTACAAGCTACGTCAACTACTACTACCTGGACGCAGGGTTGGTAGAATCGGACTGCGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTAACATCCGGCCATCATGCAGCTGTCAACTTCGGACAGTATGATTTTGCAGGTTATTTTCCAAATAGGCCTGCCATTACTAGAACTAAGATGCCTATTGAGGATCCGACGGAAGAAGAATGGAAGCAATTCATAAAGAACCCTGAGCAAGCGCTATTGGCATGCTTACCTTCAGTTTTTCAAGCGACACGAATTATGGCCATTTTGGACGTGTTATCGACTTATTCTAAAGATGAAGAGTATATTGGTCAGCGCATTAAACCATCTTGGGAAGTCAATCAAATTCTAAAGTCCTCCTTTCAAACATTTACCGAGAGGTTGATGGAGCTCAAAGAAATTATAGATCGAAGAAACGCTGACAAAAATTTGAAGAATAGAACCGAAGCTGGCCTCGTACCGTATGAGCTTCTTGTACTAGCTTCGAAAGAAGGGGTCACTGCACAACGAGTTCCAAATAATATCTCAATTTGA

Network for GWHGAAZE008177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	4	41	8.10E-07
PF00305.20	Lipoxygenase	75	234	1.20E-81
PF00305.20	Lipoxygenase	234	371	3.50E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.024
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.023
	SRR8316896	Juvenile bud stage	0.037
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.009
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.073
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.020
	SRR6706287	Light intensity 50%	0.012
	SRR6706288	Light intensity 20%	0.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.071
	CNS0095593	Slightly white alabastrum(diploid) 2	0.010
	CNS0095594	Slightly white alabastrum(diploid) 3	0.018
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.028
	CNS0095602	Golden flower (diploid) 2	0.004
	CNS0095603	Golden flower (diploid) 3	0.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.008
	CRR073298	Stem 2	0.100
	CRR073299	Stem 3	0.253
	CRR073300	Leaf 1	0.140
	CRR073301	Leaf 2	0.033
	CRR073302	Leaf 3	0.060
	CRR073303	Juvenile bud 1	0.074
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.006
	CRR073308	Third green 3	0.015
	CRR073309	Second white 1	0.143
	CRR073310	Second white 2	0.020
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.009
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000