Gene detail

Detail information of GWHGAAZE008179

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACQ76787.1	0	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	0	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|C4NZX3\|C4NZX3_CAMSI	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	6E-146	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	64196183	64199571	-
GWHAAZE00000002	mRNA	64196183	64199571	-
GWHAAZE00000002	exon	64196183	64196401	-
GWHAAZE00000002	exon	64196476	64196600	-
GWHAAZE00000002	exon	64197160	64197500	-
GWHAAZE00000002	exon	64198271	64198453	-
GWHAAZE00000002	exon	64199270	64199571	-
GWHAAZE00000002	CDS	64199270	64199571	-
GWHAAZE00000002	CDS	64198271	64198453	-
GWHAAZE00000002	CDS	64197160	64197500	-
GWHAAZE00000002	CDS	64196476	64196600	-
GWHAAZE00000002	CDS	64196183	64196401	-

Transcript Sequence
>GWHTAAZE008187 ATGCAGGCTCTAGATCAAGGGAAGCTATTTATTCTAGATTACCATGATCTACTCTTACAATATGTGAACAAAGTAAGAGACATTAAGGGGACAACTCTCTATGGTTCAAGGACACTAATGTTCCTAAAGCCTACCGAAGAGTTGATGCCGGTAGCCATTGAGTTAACTCGGCCACCGGCTAATAAGCAACCTCAATGGAAACAAGTGTTTACGCCCTCCTCAGATGCTACGTGGCTTTGGAAACTGGCTAAGACTCACGTTCTTGCTCATGACGCTGGTTATCATCAGCTAGTTAGTCATTGGCTAAGAACACACTGTGTGACAGAGCCTTACATAATTGCGAGTAACCGTCAACTTAGTGCAATGCATCCGATCTATAGGCTTTTACACCCTCATTTTCGGTACACAATGGCGATTAATGCCGAAGCTCGACAATCGCTTATAAATGCAAATGGAACCATCGAGATGGGATTTTCGCCTGGAAAGGGAATGGCTAAAGAAGATTCAACTGCTCCCCATGGCCTAAAGCTTGCAATTGAAGACTATCCCTTTGCTAGCGATGGTTTAATCCTTTGGGATGCCATTAAAGAATGGGTTACTAGCTACGTTAACTACTACTACCCGGATGCAAGCTTGGTAGAATTGGACCGCGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTAGGCCATGGCGACAAAAAGGACGATCCATTTTGGCCCGATCTTAATACCCCGAATGATCTTATCGAAATCCTTACAATTATGATATGGGTAACATCCGGCCATCATGCAGCTGTCAACTTCGGACAGTATGATTTTGCAGGTTATTTTCCAAATAGGCCTGCCATTGCCAGAACTAAGATGCCTACTGAGGATCCGACAGAAGAAGAATGGAAGCAATTCATAAAGAACCCTGAGCAGGCGCTATTGGCGTGCTTACCTTCAGTTCACATTGAACCGTCTTGGGAAGAAAATCAAATTCTGAAGTCGTCGTTCCAAACGTTTACCGCTAGGTTGATGGAGCTCAAAGCAATTATAGATCGGAGAAATGCTGACAAAAAATTGAAGAATAGAACCGGAGCTGGCCTCATACCGTATGAGCTTCTTGTACCAGTTTCAAAAGAAGGGGTCACCGCACAAGGAGTCCCGAATAGTATCTCGATTTGA

Network for GWHGAAZE008179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0044

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	2	162	1.10E-80
PF00305.20	Lipoxygenase	162	316	5.00E-74
PF00305.20	Lipoxygenase	320	372	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.913
	SRR3591706	second leaf	3.229
	SRR3591707	mature leaf	0.893
	SRR3591708	Shoot apex	13.703
	SRR3591709	Stem	1.346
	SRR3591710	White floral bud	36.711
	SRR3591711	White flower	27.604
	SRR3591712	Green floral bud	72.021
	SRR3591713	Yellow flower	11.836
SRP173429	SRR8316895	Juvenile bud stage	28.831
	SRR8316896	Juvenile bud stage	43.774
	SRR8316897	Juvenile bud stage	4.245
	SRR8316894	Third green stage	15.732
	SRR8316900	Third green stage	12.595
	SRR8316901	Third green stage	15.719
	SRR8316898	Complete white stage	1.660
	SRR8316899	Complete white stage	2.280
	SRR8316903	Complete white stage	1.366
	SRR8316902	Silver flowering stage	0.797
	SRR8316904	Silver flowering stage	1.190
	SRR8316905	Silver flowering stage	0.642
	SRR8316906	Gold flowering stage	1.204
	SRR8316907	Gold flowering stage	2.131
	SRR8316908	Gold flowering stage	0.424
SRP132670	SRR6706286	Control	25.053
	SRR6706287	Light intensity 50%	20.156
	SRR6706288	Light intensity 20%	16.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.226
	CNS0095593	Slightly white alabastrum(diploid) 2	3.562
	CNS0095594	Slightly white alabastrum(diploid) 3	8.125
	CNS0095595	Whole white alabastrum(diploid) 2	3.488
	CNS0095596	Whole white alabastrum(diploid) 3	5.137
	CNS0095597	Whole white alabastrum(diploid) 4	2.476
	CNS0095598	Silvery flower (diploied) 1	11.930
	CNS0095599	Silvery flower (diploied) 2	3.162
	CNS0095600	Silvery flower (diploied) 3	3.075
	CNS0095601	Golden flower (diploid) 1	5.927
	CNS0095602	Golden flower (diploid) 2	6.204
	CNS0095603	Golden flower (diploid) 3	5.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.164
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.363
	CNS0095610	Silvery flower (tetraploid) 1	1.221
	CNS0095611	Silvery flower (tetraploid) 2	3.216
	CNS0095612	Silvery flower (tetraploid) 3	5.479
	CNS0095613	Golden flower (tetraploid) 1	0.562
	CNS0095614	Golden flower (tetraploid) 2	0.579
	CNS0095615	Golden flower (tetraploid) 3	2.517
CRA001975	CRR073297	Stem 1	82.295
	CRR073298	Stem 2	76.533
	CRR073299	Stem 3	62.291
	CRR073300	Leaf 1	10.332
	CRR073301	Leaf 2	16.415
	CRR073302	Leaf 3	15.735
	CRR073303	Juvenile bud 1	1.474
	CRR073304	Juvenile bud 2	4.994
	CRR073305	Juvenile bud 3	2.275
	CRR073306	Third green 1	1.052
	CRR073307	Third green 2	0.238
	CRR073308	Third green 3	0.415
	CRR073309	Second white 1	0.090
	CRR073310	Second white 2	0.327
	CRR073311	Second white 3	0.017
	CRR073312	Silver flowering 1	0.131
	CRR073313	Silver flowering 2	0.013
	CRR073314	Silver flowering 3	0.108
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.143
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.140
	CRR073320	Tawny withering 3	0.000