Detail information of GWHGAAZE008196


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090388.16.4159E-25PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Sesamum indicum]
trEMBLtr|A0A067EDV1|A0A067EDV1_CITSI4E-24Uncharacterized protein {ECO:0000313|EMBL:KDO49081.1} (Fragment)
TAIR10AT1G80930.11E-14MIF4G domain-containing protein / MA3 domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6478274364785682-
GWHAAZE00000002mRNA6478274364785682-
GWHAAZE00000002exon6478274364782880-
GWHAAZE00000002exon6478367164783705-
GWHAAZE00000002exon6478380764783887-
GWHAAZE00000002exon6478525864785324-
GWHAAZE00000002exon6478558164785682-
GWHAAZE00000002CDS6478558164785682-
GWHAAZE00000002CDS6478525864785324-
GWHAAZE00000002CDS6478380764783887-
GWHAAZE00000002CDS6478367164783705-
GWHAAZE00000002CDS6478274364782880-
Transcript Sequence

Network for GWHGAAZE008196

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0045


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.715
SRR3591706second leaf3.174
SRR3591707mature leaf2.095
SRR3591708Shoot apex10.502
SRR3591709Stem6.265
SRR3591710White floral bud2.449
SRR3591711White flower3.475
SRR3591712Green floral bud3.854
SRR3591713Yellow flower1.215
SRP173429 SRR8316895Juvenile bud stage 6.404
SRR8316896Juvenile bud stage 7.790
SRR8316897Juvenile bud stage 6.204
SRR8316894Third green stage 3.336
SRR8316900Third green stage 4.436
SRR8316901Third green stage 5.039
SRR8316898Complete white stage 0.468
SRR8316899Complete white stage 5.068
SRR8316903Complete white stage 1.777
SRR8316902Silver flowering stage0.157
SRR8316904Silver flowering stage0.781
SRR8316905Silver flowering stage0.427
SRR8316906Gold flowering stage 0.761
SRR8316907Gold flowering stage 0.859
SRR8316908Gold flowering stage 1.830
SRP132670SRR6706286Control4.065
SRR6706287Light intensity 50%3.581
SRR6706288Light intensity 20%3.728
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.257
CNS0095593Slightly white alabastrum(diploid) 25.531
CNS0095594Slightly white alabastrum(diploid) 37.886
CNS0095595Whole white alabastrum(diploid) 210.217
CNS0095596Whole white alabastrum(diploid) 39.633
CNS0095597Whole white alabastrum(diploid) 413.211
CNS0095598Silvery flower (diploied) 14.876
CNS0095599Silvery flower (diploied) 23.794
CNS0095600Silvery flower (diploied) 33.627
CNS0095601Golden flower (diploid) 17.915
CNS0095602Golden flower (diploid) 25.263
CNS0095603Golden flower (diploid) 33.907
CNS0095604Slightly white alabastrum(tetraploid) 111.494
CNS0095605Slightly white alabastrum(tetraploid) 27.607
CNS0095606Slightly white alabastrum(tetraploid) 36.238
CNS0095607Whole white alabastrum(tetraploid) 110.806
CNS0095608Whole white alabastrum(tetraploid) 27.502
CNS0095609Whole white alabastrum(tetraploid) 36.406
CNS0095610Silvery flower (tetraploid) 10.250
CNS0095611Silvery flower (tetraploid) 21.486
CNS0095612Silvery flower (tetraploid) 30.521
CNS0095613Golden flower (tetraploid) 10.025
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.033
CRA001975CRR073297Stem 14.835
CRR073298Stem 24.857
CRR073299Stem 32.359
CRR073300Leaf 16.272
CRR073301Leaf 24.566
CRR073302Leaf 32.443
CRR073303Juvenile bud 11.566
CRR073304Juvenile bud 21.015
CRR073305Juvenile bud 31.114
CRR073306Third green 10.542
CRR073307Third green 20.500
CRR073308Third green 30.251
CRR073309Second white 10.259
CRR073310Second white 20.583
CRR073311Second white 30.067
CRR073312Silver flowering 10.078
CRR073313Silver flowering 20.660
CRR073314Silver flowering 30.163
CRR073315Gold flowering 12.350
CRR073316Gold flowering 22.811
CRR073317Gold flowering 30.172
CRR073318Tawny withering 12.414
CRR073319Tawny withering 23.176
CRR073320Tawny withering 36.524