Gene detail

Detail information of GWHGAAZE008200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651262.1	6.5821E-120	PREDICTED: transcription factor bHLH130-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9C690\|BH122_ARATH	4E-63	Transcription factor bHLH122
trEMBL	tr\|A5B890\|A5B890_VITVI	5E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80884.1}
TAIR10	AT1G51140.1	2E-50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	64967142	64972225	+
GWHAAZE00000002	mRNA	64967142	64972225	+
GWHAAZE00000002	exon	64967142	64967709	+
GWHAAZE00000002	exon	64968193	64968500	+
GWHAAZE00000002	exon	64968768	64968941	+
GWHAAZE00000002	exon	64969604	64969669	+
GWHAAZE00000002	exon	64969759	64969827	+
GWHAAZE00000002	exon	64970191	64970215	+
GWHAAZE00000002	exon	64972062	64972225	+
GWHAAZE00000002	CDS	64967142	64967709	+
GWHAAZE00000002	CDS	64968193	64968500	+
GWHAAZE00000002	CDS	64968768	64968941	+
GWHAAZE00000002	CDS	64969604	64969669	+
GWHAAZE00000002	CDS	64969759	64969827	+
GWHAAZE00000002	CDS	64970191	64970215	+
GWHAAZE00000002	CDS	64972062	64972225	+

Transcript Sequence
>GWHTAAZE008208 ATGGATCAAAATCAGCAACAGCAGCAAACAATGAACTCAGGTTTAATGAGGTATAGATCTGCACCGAGTTCGTATTTTACTAATTTGATTAACAGTGGTGGTATTGGTGGTTATGGAGAAGGGGGAGAAGATATTGATCCCTTTTTAAACCCTAGGATTCCTAGTCCAGAAACAGAGAGAATTCTGTCTAGGTTTATATCGGATGGTGCGGATTTGTTACATGACAATCCGTTAATTGAGAGAAGTGATTTGGGGAATGAGGCGGTTCAACCGCAGTTTGTGGGGACTATGAAGCATGAAAATGAGGTTTTCGGTCAAAATCGTATGTATCAACAAGAGAATACTAAGGCGTTATCTTCAGGTACTGGTATGGTTTATGAAGGCCAATTATCTCAGCCTAGTAATTTGGGGAGCTCGGTTGTTATGGATCGTTTGCCGCAGACGGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGGAGTAGTTCGAATCTCATTCGACACAGTAGCTCGCCTGCTGGATTGTTTGCTCAAATCAATGTTGAAAATGGTAAAGAAGAAGTTTTTGTTTGCTATGCTGTAATAAGAGGCATGGGAGATTATGGAGCTGGTGGTGGTACTAATGCAGAGGCAGCATCATTTTCCCCTGCAAGCAGGTCGAAAGGTCAAATGGATTTCGCCTCGGGTCCACCATCTTCTTCTTCGGGGCTACTGCCTCGTATTTCTGAAATCGGGGGCAAAAGCATGGCAAGGAGTAGCCCTGAAGGCGGAAGATTTGATTCTTGGGACGATTCAGCACTGCTCTCCGACAATTTTCTTAAAGGACTTGGAGAAAATGATAGACCTGCATTTTCTAACTTCAATTCTCAAGAAAACCAGGATGGCGAAGGTGGAAGTCGGCCTCCCAATGTATTGACTCATCACTTGAGTTTGCCGACGAGTTCGGCAGAGTTGTCTGCAATGGAGAAGCTGTTGCACTTTCAAGATTCTGTACCTTTAAAGATCAGAGCCAAGAGGGGTTGTGCCACTCACCCCCGCAGCATTGCCGAGAGGGTGCGAAGAACCCGAATTAGTGAAAGAATGAGAAAACTACAAGAACTTGTCCCAAATATGGACAAGCAAACAAACACATCAGACATGCTGGATTTGGCTGTCGACTACATTAAAGACCTTCAGAACCAAGTCAAGACGCTTTCGGATCTTCGCGCCAAATCTTGGAGGAGCATTGGGAAACAAAGGGAAGGCAAAGGGAATAGGGTTGCTAAAGAATGGATCGTGGATGGGTGGTTGGGAGGTGAGTGGAAGAGAGTAGAGAAGCAAGTAATGGTGGCGATAGTTGTAGACCAATACGTGATTGGCCAAGAGGTGGCGTGGTGA

Network for GWHGAAZE008200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	346	391	9.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.671
	SRR3591706	second leaf	9.590
	SRR3591707	mature leaf	10.554
	SRR3591708	Shoot apex	7.275
	SRR3591709	Stem	13.030
	SRR3591710	White floral bud	8.554
	SRR3591711	White flower	33.719
	SRR3591712	Green floral bud	4.244
	SRR3591713	Yellow flower	69.413
SRP173429	SRR8316895	Juvenile bud stage	2.807
	SRR8316896	Juvenile bud stage	4.346
	SRR8316897	Juvenile bud stage	1.670
	SRR8316894	Third green stage	2.765
	SRR8316900	Third green stage	5.449
	SRR8316901	Third green stage	5.099
	SRR8316898	Complete white stage	3.201
	SRR8316899	Complete white stage	6.692
	SRR8316903	Complete white stage	6.475
	SRR8316902	Silver flowering stage	10.067
	SRR8316904	Silver flowering stage	14.661
	SRR8316905	Silver flowering stage	6.273
	SRR8316906	Gold flowering stage	38.960
	SRR8316907	Gold flowering stage	31.422
	SRR8316908	Gold flowering stage	34.821
SRP132670	SRR6706286	Control	7.255
	SRR6706287	Light intensity 50%	6.902
	SRR6706288	Light intensity 20%	6.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.509
	CNS0095593	Slightly white alabastrum(diploid) 2	4.530
	CNS0095594	Slightly white alabastrum(diploid) 3	4.335
	CNS0095595	Whole white alabastrum(diploid) 2	3.043
	CNS0095596	Whole white alabastrum(diploid) 3	2.881
	CNS0095597	Whole white alabastrum(diploid) 4	2.920
	CNS0095598	Silvery flower (diploied) 1	12.183
	CNS0095599	Silvery flower (diploied) 2	8.093
	CNS0095600	Silvery flower (diploied) 3	12.287
	CNS0095601	Golden flower (diploid) 1	8.275
	CNS0095602	Golden flower (diploid) 2	10.319
	CNS0095603	Golden flower (diploid) 3	10.816
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.251
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.730
	CNS0095610	Silvery flower (tetraploid) 1	35.819
	CNS0095611	Silvery flower (tetraploid) 2	21.786
	CNS0095612	Silvery flower (tetraploid) 3	32.735
	CNS0095613	Golden flower (tetraploid) 1	52.354
	CNS0095614	Golden flower (tetraploid) 2	31.932
	CNS0095615	Golden flower (tetraploid) 3	68.255
CRA001975	CRR073297	Stem 1	7.884
	CRR073298	Stem 2	7.562
	CRR073299	Stem 3	6.703
	CRR073300	Leaf 1	6.442
	CRR073301	Leaf 2	8.009
	CRR073302	Leaf 3	5.354
	CRR073303	Juvenile bud 1	4.605
	CRR073304	Juvenile bud 2	2.793
	CRR073305	Juvenile bud 3	5.038
	CRR073306	Third green 1	9.005
	CRR073307	Third green 2	8.146
	CRR073308	Third green 3	7.744
	CRR073309	Second white 1	10.979
	CRR073310	Second white 2	22.924
	CRR073311	Second white 3	20.275
	CRR073312	Silver flowering 1	36.230
	CRR073313	Silver flowering 2	29.524
	CRR073314	Silver flowering 3	38.411
	CRR073315	Gold flowering 1	15.600
	CRR073316	Gold flowering 2	22.190
	CRR073317	Gold flowering 3	9.225
	CRR073318	Tawny withering 1	11.299
	CRR073319	Tawny withering 2	10.625
	CRR073320	Tawny withering 3	12.883