Gene detail

Detail information of GWHGAAZE008228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EMT18654.1	0	Putative lipoxygenase 8, chloroplastic [Aegilops tauschii]
Swissprot	tr\|O24370\|LOX21_SOLTU	9E-166	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|R7WF69\|R7WF69_AEGTA	0	Putative lipoxygenase 8, chloroplastic {ECO:0000313\|EMBL:EMT18654.1}
TAIR10	AT3G45140.1	1E-129	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65700639	65708805	+
GWHAAZE00000002	mRNA	65700639	65708805	+
GWHAAZE00000002	exon	65700639	65700912	+
GWHAAZE00000002	exon	65701943	65702253	+
GWHAAZE00000002	exon	65702528	65702765	+
GWHAAZE00000002	exon	65702965	65703279	+
GWHAAZE00000002	exon	65703423	65703508	+
GWHAAZE00000002	exon	65703903	65704024	+
GWHAAZE00000002	exon	65706463	65706726	+
GWHAAZE00000002	exon	65707435	65707775	+
GWHAAZE00000002	exon	65708387	65708805	+
GWHAAZE00000002	CDS	65700639	65700912	+
GWHAAZE00000002	CDS	65701943	65702253	+
GWHAAZE00000002	CDS	65702528	65702765	+
GWHAAZE00000002	CDS	65702965	65703279	+
GWHAAZE00000002	CDS	65703423	65703508	+
GWHAAZE00000002	CDS	65703903	65704024	+
GWHAAZE00000002	CDS	65706463	65706726	+
GWHAAZE00000002	CDS	65707435	65707775	+
GWHAAZE00000002	CDS	65708387	65708805	+

Transcript Sequence
>GWHTAAZE008236 ATGATAAGCATATTTGCTCCACCATTGATGAAGCTAGGGTTACTAGCCCTAGTGGTAAAGCTTTTTTTACGGACCCCATTACTCGGGTGGCTACTAGCTAGCCCAAGTCCTAGTAACGAGAGGTCTATTGTTAATGGAAATATTTTCTTACCGCCCGATAAAGCTACTATTAAAGCTGTCGTTAGCGCGAAATTTAATCAAAATCAACTCAAGTGGTTAAATTCTATGATAGCAAAACTCACGTTGGAGATTGTTCCTGCGGAGATTGACCCAAGGACTGGGTTAGAGAAGGAAACAGTAAAAGAGGAAGCTAAAGGGATCAGAGATGGGGATGAGGTGAAGTTTGAGGCAACGTTTGAAGTTCCATTGGATTTTGGAGAGATTGGTGCAGTGATAGTAAGGAATGAACATTTCAAAGAGATGTACCTCTACAACATATCTCTTGGTCAACTAAGAAAGGGCACTCTTACCATTAACTGCAACTCTTGGGTTCATTCCAAAGATGATAATCCAGAGGACAGAATTTTCTTTACAAACAAGGTTAACTCTACTCCCTCTCTCTCTCTCTCTCTAAGTAGCGGAAAATCATATTTGCCATCCCAAACACCATCTGGGGTGAGGTGGCTGAGAGAGAAAGAGCTCCGGATTCTGCGAGGTGATGGCGGTGGAGAGCGCAAAAAATTTGAAAGGATTTATGATTATGATGTCTATAATGATCTCGGAAACCCTGATGTTGATACTAATTTATTAAGACCAGTGTTAGGTGGCACGGAGTTCGCATACCCGAGACGTTGCAGAACAGGTCGCCCACAGTGCAAGACAGATCCATCATCAGAGTCGAGGAGTGACGAGATTTACTTGCCGAGGGATGAAGAATTTTCGGAGGTGAAACGTCAGTCGTTCCAATTGAGTAAGTTGTTCGCAATTGCGCATGCAATCTTACCTTCTTTCGTTGAGATGTCTTCGACCGACAAAGAATTCCCCTACTTCACAAAAATCGACACACTTTTTGCGGAAGGGATCAATCTCAAAGTCAAAACCAAACTCGATCTACGAGATATTCTTCCCAGTTTTATCAAAAAGATTGTAAATGCTGGAGAGTATCTCTTCCGCTTTGAGATCCCTAAATTGATGGCCAGAGACAGATTTTCTTGGCATAGGGATGAGGAATTTTGTCGACAAACACTAGCTGGTCTCAACCCATGTAGTATCCAGTTGTTGCAGGAATGGCCATTGAGAAGTAAGCTGGACCCTGAGGTGTATGGACCACCTGAATCAGCCATCACCAAAGAGATTGTGGAGGAACAGATAAAATATTTCATGACCTTTGAAGAGGTAATAGAAAGGCTAAGAACACATTGCGTGACAGAGCCTTACATAATTGCGAGCAATCGTCAACTTAGTGCAATGCACCCGATCTATAGACTTTTGCACCCTCATTTTCGGTTTACATTGGCGATTAATGCCGAAGCTCGACAATCGCTCATAAATGCAAATGGAACCATCGAGATGGGATTTTCACCTAGTAAGTACTCTATGGAGCTAAGCTCTATTGCCTACAACCAGTGGAACTTTCTTTTCCAGGGACTTCCAGCAGATTTATTAGTCAGGGGAATGGCTAAAGAAGATTCAACTGCTCCGCATGGCCTAAAGCTTGCAATTGAAGACTATCCCTTTGCTAGCGATGGTTTAATCCTTTGGGATGCCATTAAAGAATGGGTTACTAGCTACGTTAACTATTACTACCCGGATGTGAGCTTAGTAGAATCAGACAACGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTAGGCCATGGCGACAAAAAGGACGATCCATTGTGGCCCGTTCTTAACACCCCAAATAATCTTATCGAAATCCTCACAATTATGATATGGGTAACATCCGGCCATCATGCAGCTGTCAACTTCGGACAGTATGATTTTGCAGGTTATTTTCCAAATAGGCCTGCCATTGCCAGAACTAAGATGCCTATTGAGGATCCGACAGAAGAAGAATGGAAGCAATTCATAAAGAACCCTGAGCAAGCACTTTTGGCGTGCTTACCTTCAGTTGTTCAAGCAACGACAGTTATGGCCATTTTGGACGTGTTATCAACTCATTCTAAAGATGAAGAGTACATTGGTCAGCGCATTGAACCATCTTGGGAAGAAAATCAAATTCTGAAGTCGTCCTTTCAAACATTTACTGCGAGGTTGATGGAGCTCAAAAAAATTATAGATCGGAGAAATGCTGACAAAAATTTGAAGAATAGAACCGGAGCTGGCCTCGTACCGTATGAGCTTCTTGTACCAGTTTCGAAAGAAGGGGTCACCGCACAAGGAGTTCCGAATAGTATCTCAATTTGA

Network for GWHGAAZE008228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	115	177	2.30E-07
PF00305.20	Lipoxygenase	206	449	3.00E-84
PF00305.20	Lipoxygenase	450	772	2.20E-158

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	0.244
	SRR3591707	mature leaf	1.127
	SRR3591708	Shoot apex	0.050
	SRR3591709	Stem	0.038
	SRR3591710	White floral bud	2.307
	SRR3591711	White flower	38.216
	SRR3591712	Green floral bud	0.957
	SRR3591713	Yellow flower	31.947
SRP173429	SRR8316895	Juvenile bud stage	0.793
	SRR8316896	Juvenile bud stage	1.292
	SRR8316897	Juvenile bud stage	0.016
	SRR8316894	Third green stage	0.496
	SRR8316900	Third green stage	0.525
	SRR8316901	Third green stage	0.368
	SRR8316898	Complete white stage	0.141
	SRR8316899	Complete white stage	0.106
	SRR8316903	Complete white stage	0.086
	SRR8316902	Silver flowering stage	2.980
	SRR8316904	Silver flowering stage	5.484
	SRR8316905	Silver flowering stage	1.902
	SRR8316906	Gold flowering stage	6.237
	SRR8316907	Gold flowering stage	6.161
	SRR8316908	Gold flowering stage	2.411
SRP132670	SRR6706286	Control	0.987
	SRR6706287	Light intensity 50%	0.705
	SRR6706288	Light intensity 20%	0.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.037
	CNS0095593	Slightly white alabastrum(diploid) 2	0.043
	CNS0095594	Slightly white alabastrum(diploid) 3	0.076
	CNS0095595	Whole white alabastrum(diploid) 2	0.019
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.063
	CNS0095598	Silvery flower (diploied) 1	0.608
	CNS0095599	Silvery flower (diploied) 2	0.219
	CNS0095600	Silvery flower (diploied) 3	0.642
	CNS0095601	Golden flower (diploid) 1	0.318
	CNS0095602	Golden flower (diploid) 2	0.362
	CNS0095603	Golden flower (diploid) 3	0.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.819
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.906
	CNS0095610	Silvery flower (tetraploid) 1	0.661
	CNS0095611	Silvery flower (tetraploid) 2	1.076
	CNS0095612	Silvery flower (tetraploid) 3	26.332
	CNS0095613	Golden flower (tetraploid) 1	6.706
	CNS0095614	Golden flower (tetraploid) 2	1.122
	CNS0095615	Golden flower (tetraploid) 3	4.209
CRA001975	CRR073297	Stem 1	1.841
	CRR073298	Stem 2	1.921
	CRR073299	Stem 3	1.089
	CRR073300	Leaf 1	0.127
	CRR073301	Leaf 2	0.217
	CRR073302	Leaf 3	0.139
	CRR073303	Juvenile bud 1	0.025
	CRR073304	Juvenile bud 2	0.139
	CRR073305	Juvenile bud 3	0.011
	CRR073306	Third green 1	5.276
	CRR073307	Third green 2	1.958
	CRR073308	Third green 3	4.269
	CRR073309	Second white 1	4.102
	CRR073310	Second white 2	14.866
	CRR073311	Second white 3	11.267
	CRR073312	Silver flowering 1	8.360
	CRR073313	Silver flowering 2	6.213
	CRR073314	Silver flowering 3	5.958
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000