Gene detail

Detail information of GWHGAAZE008231

Functional Annotation

Database	Orthologs	Annotation
Nr	ADO51752.1	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|E3UIM5\|E3UIM5_CAMSI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65849077	65857286	+
GWHAAZE00000002	mRNA	65849077	65857286	+
GWHAAZE00000002	exon	65849077	65849373	+
GWHAAZE00000002	exon	65849456	65849516	+
GWHAAZE00000002	exon	65850577	65850842	+
GWHAAZE00000002	exon	65851606	65851843	+
GWHAAZE00000002	exon	65852040	65852354	+
GWHAAZE00000002	exon	65852443	65852528	+
GWHAAZE00000002	exon	65852919	65853029	+
GWHAAZE00000002	exon	65853878	65854179	+
GWHAAZE00000002	exon	65854994	65855255	+
GWHAAZE00000002	exon	65855950	65856289	+
GWHAAZE00000002	exon	65856868	65857286	+
GWHAAZE00000002	CDS	65849077	65849373	+
GWHAAZE00000002	CDS	65849456	65849516	+
GWHAAZE00000002	CDS	65850577	65850842	+
GWHAAZE00000002	CDS	65851606	65851843	+
GWHAAZE00000002	CDS	65852040	65852354	+
GWHAAZE00000002	CDS	65852443	65852528	+
GWHAAZE00000002	CDS	65852919	65853029	+
GWHAAZE00000002	CDS	65853878	65854179	+
GWHAAZE00000002	CDS	65854994	65855255	+
GWHAAZE00000002	CDS	65855950	65856289	+
GWHAAZE00000002	CDS	65856868	65857286	+

Transcript Sequence
>GWHTAAZE008239 ATGGCTTCTCCACTCCACCTACACCACCCACATTCCCATGCCCTAACCCTAATTTGGCCCTCTAGCCACCGGCATAATCCCTTCTTTATTAAGCAAAAACAAAATCGCAAAACCTACAAGACTTCTTGTGTTCACTATAATTCCGGTGATATAAAACCCGTATCAAGCCTTAATGATAAGCATATCAGCTCCACCATTGATGAAGCTGGGGTAACTAGCCCTAGTGGTAAAGTCGTTTTTACGGACCCCATTACTCAGGTGGCTACTAGCCCAAGTCCTAGTAACGAGAGGTCTATTGGGTTCAATTCTATAATAGCAAAACTCACGTTGGAGATTGTTCCTGCGGAGATTGACCCAAGGACTGGGTTAGAGAAGGAAACAGTCAAAGAGGAAGCTAAAGGGATCAGAGATGGGGATGAGGTGAAGTTTGAGGCAACGTTTGAAGTTCCATTGGATTTTGGAGAGATTGGTGCAGTGATAGTAAGGAATGAACATTTCAAAGAGATGTACCTCTACAACATATCTCTTGGTCAACTCAGAAAGGGCACTCTTACCATTAACTGCAACTCTTGGGTTCATTCCAAAGATGATAATCCAGAGGACAGAATTTTCTTTACAAACAAGTCATATTTGCCATCCCAAACACCATCTGGGGTGAGGCGGCTAAGAGAGAAAGAGCTCCGGATTCTGCGAGGTGATGGCCGTGGAGAGCGCAAAAAATTTGAAAGGATTTATGATTATGATGTCTATAATGATCTCGGAAACCCTGACGCTGATAGTAACTTATCAAGACCAGTATTAGGTGGCACGGAGTACGCATACCCGAGACGTTGCAGAACAGGTCGCCCACGGTGCAAGACAGATCCATTATCAGAGTCGAGGAGTGACGAGATTTACCTGCCGAGGGATGAAGAATTTTCGGAGATGAAAAGTCAGTCGTTCCAATTGAATAAGTTGTTTGCAATTGCGCATGCAATCTTACCTTCTGTCGTTGAGATGTCTTCAACTGACAAAGAATTCCCCTACTTCACAAAAATCGACACACTTTTTGCGGAAGGGATCAATCTCAAAGTCAAAACCAAACTTGATCTACGAGATATTCTTCCCAGTTTTATCAAAAAGATTGTAAATGCTGGAGAGTATCTCTTCCGCTTTGAGATCCCTCAGTTGATGGCTAGAGACAGATTTTCTTGGCATAGGGATGAGGAATTTTGTCGACAAACACTTGCTGGTCTCAACCCATGTAGTATCCAGTTGTTGCAGGAATGGCCATTGAGAAGTGAGCTGGACCCTGAGGTGTACGGACCACCTGAATCAGCCATCACCAAAGAGATTGTGGAGGAACAGATAAAAGATTTCATGACCTTTGAAGAGGCTCTAGATCAAGGGAAGCTATTTATTCTAGATTACCATGATCTACTCTTACAATATGTGAACAAAGTAAGAGACATTAAGGGGACAACTCTCTATGGTTCAAGGACACTAATGTTCCTAAAGCCTACTGAAGAGTTGATGCCGGTAGCCATTGAGTTAACTCGGCCACCGGCTAATAAGCAACCTCAATGGAAACAAGTGTTTACGCCCTCCTCAGATGCTACAGGTGCGTGGCTTTGGAAACTGGCTAAGACTCACGTTCTTGCTCATGACGCTGGTTATCATCAGCTAGTTAGTCATTGGCTAAGAACACACTGTGTGACAGAGCCTTACATAATTGCGAGTAACCGTCAACTTAGTGCAATGCATCCGATCTATAGGCTTTTACACCCTCATTTTCGGTACACAATGGCGATTAATGCGGCTTCGACAATCGCTCATAAATGCAAATGGAACCATCGAGATGGGATTTTCACCTGGAAAGTACTCTATGGAGCTAAGCTCTATTGCCTACAACCAGTGGAGCTTTTTTTTCCAGGGACTTCCAGCGGATTTATTAGTCAGGGAATGGCTAAAGAAGATTCAACTGCTCCCCATGGCCTAAAGCTTGCAATTGAAGACTATCCCTTTGCTAGCGATGGTTTAATCCTTTGGGATGCCATTAAAGAATGGGTTACTAGCTACGTTAACTACTACTACCCGGATGCAAGCTTGGTAGAATTGGACCGCGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTAGGCCATGGCGACAAAAAGGACGATCCATTTTGGCCCGATCTTAATACCCCGAATGATCTTATCGAAATCCTTACAATTATGATATGGGTAACATCCGGCCATCATGCAGCTGTCAACTTTGGACAGTATGATTTTGCAGGTTATTTTCCAAATAGGCCTGCCATTGCCAGAACTAAGATGCCTACTGAGGATCCGACAGAAGAAGAATGGAAGCAATTCATAAAGAACCCTGAGCAGGCGCTATTGGCGTGCTTACCTTCAGTTGTTCAAGCGACGATAGTTATGGCCATTTTGGACGTGTTATCGACTCATTCTAAAGATGAAGAGTACATTGGTCAGCACATTGAACCGTCTTGGGAAGAAAATCAAATTCTGAAGTCGTCGTTTCAAACTTTTACCGCTAGGTTGATGGAGCTCAAAGCAATTATAGATCGGAGAAATGCTGACAAAAAATTGAAGAATAGAACCGGAGCTGGCCTCATACCGTATGAGCTTCTTGTACCAGTTTCAAAAGCAGGGGTCACCGCACAAGGAGTCCCAAATAGTATCTCGATTTGA

Network for GWHGAAZE008231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0044

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	143	205	2.70E-07
PF00305.20	Lipoxygenase	219	881	9.10E-277

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.634
	SRR3591706	second leaf	5.995
	SRR3591707	mature leaf	1.908
	SRR3591708	Shoot apex	16.828
	SRR3591709	Stem	2.912
	SRR3591710	White floral bud	62.830
	SRR3591711	White flower	51.509
	SRR3591712	Green floral bud	90.862
	SRR3591713	Yellow flower	21.240
SRP173429	SRR8316895	Juvenile bud stage	75.433
	SRR8316896	Juvenile bud stage	112.499
	SRR8316897	Juvenile bud stage	19.209
	SRR8316894	Third green stage	38.224
	SRR8316900	Third green stage	40.478
	SRR8316901	Third green stage	37.146
	SRR8316898	Complete white stage	4.155
	SRR8316899	Complete white stage	6.734
	SRR8316903	Complete white stage	7.238
	SRR8316902	Silver flowering stage	2.487
	SRR8316904	Silver flowering stage	3.725
	SRR8316905	Silver flowering stage	1.654
	SRR8316906	Gold flowering stage	3.062
	SRR8316907	Gold flowering stage	6.997
	SRR8316908	Gold flowering stage	1.536
SRP132670	SRR6706286	Control	108.332
	SRR6706287	Light intensity 50%	74.866
	SRR6706288	Light intensity 20%	64.665
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.720
	CNS0095593	Slightly white alabastrum(diploid) 2	10.880
	CNS0095594	Slightly white alabastrum(diploid) 3	22.274
	CNS0095595	Whole white alabastrum(diploid) 2	7.023
	CNS0095596	Whole white alabastrum(diploid) 3	10.926
	CNS0095597	Whole white alabastrum(diploid) 4	4.967
	CNS0095598	Silvery flower (diploied) 1	30.212
	CNS0095599	Silvery flower (diploied) 2	12.306
	CNS0095600	Silvery flower (diploied) 3	8.818
	CNS0095601	Golden flower (diploid) 1	19.851
	CNS0095602	Golden flower (diploid) 2	16.866
	CNS0095603	Golden flower (diploid) 3	17.987
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.204
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.346
	CNS0095610	Silvery flower (tetraploid) 1	2.091
	CNS0095611	Silvery flower (tetraploid) 2	9.170
	CNS0095612	Silvery flower (tetraploid) 3	13.692
	CNS0095613	Golden flower (tetraploid) 1	0.920
	CNS0095614	Golden flower (tetraploid) 2	1.794
	CNS0095615	Golden flower (tetraploid) 3	7.056
CRA001975	CRR073297	Stem 1	229.353
	CRR073298	Stem 2	231.401
	CRR073299	Stem 3	155.616
	CRR073300	Leaf 1	28.306
	CRR073301	Leaf 2	42.777
	CRR073302	Leaf 3	43.424
	CRR073303	Juvenile bud 1	3.201
	CRR073304	Juvenile bud 2	14.279
	CRR073305	Juvenile bud 3	4.996
	CRR073306	Third green 1	1.811
	CRR073307	Third green 2	0.811
	CRR073308	Third green 3	1.341
	CRR073309	Second white 1	1.031
	CRR073310	Second white 2	0.374
	CRR073311	Second white 3	0.416
	CRR073312	Silver flowering 1	0.299
	CRR073313	Silver flowering 2	0.138
	CRR073314	Silver flowering 3	0.019
	CRR073315	Gold flowering 1	0.270
	CRR073316	Gold flowering 2	0.006
	CRR073317	Gold flowering 3	0.349
	CRR073318	Tawny withering 1	0.357
	CRR073319	Tawny withering 2	0.316
	CRR073320	Tawny withering 3	0.000