Gene detail

Detail information of GWHGAAZE008232

Functional Annotation

Database	Orthologs	Annotation
Nr	ACJ54281.1	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|B7TZ47\|B7TZ47_CAMSI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65973516	65983933	+
GWHAAZE00000002	mRNA	65973516	65983933	+
GWHAAZE00000002	exon	65973516	65973910	+
GWHAAZE00000002	exon	65978189	65978457	+
GWHAAZE00000002	exon	65980199	65980436	+
GWHAAZE00000002	exon	65980745	65981062	+
GWHAAZE00000002	exon	65981461	65981546	+
GWHAAZE00000002	exon	65981653	65981763	+
GWHAAZE00000002	exon	65982211	65982512	+
GWHAAZE00000002	exon	65982743	65983009	+
GWHAAZE00000002	exon	65983174	65983933	+
GWHAAZE00000002	five_prime_UTR	65973516	65973570	+
GWHAAZE00000002	CDS	65973571	65973910	+
GWHAAZE00000002	CDS	65978189	65978457	+
GWHAAZE00000002	CDS	65980199	65980436	+
GWHAAZE00000002	CDS	65980745	65981062	+
GWHAAZE00000002	CDS	65981461	65981546	+
GWHAAZE00000002	CDS	65981653	65981763	+
GWHAAZE00000002	CDS	65982211	65982512	+
GWHAAZE00000002	CDS	65982743	65983009	+
GWHAAZE00000002	CDS	65983174	65983933	+

Transcript Sequence
>GWHTAAZE008240 CCCTTCTTTCTTCAACCTCCCCCTCCTATCATCCAAACACCAAGCCAAAACCAAAATGTTGACAACTCCGGTCCACCACCACTACTCAACCACCAAAACCCTAGTACCATGGCAAAAGCCCTTCATCACCGGCGACTCCACCGCCTTGTACCCAACCCTCCAAAACTCTGTGCACCGTAAAACGTGCAGGTCCTTTCGGGTTGGCCATAGAGCCATAAAGGCCGTGGCTACCTCGGGCACCGAAAAATCCACACGCGTTAAGGCTGTGGTCACGGTCCAAGTGACCGTGGGCGGGTTCTTATCGAACATAGGGTTGGACCGAGGAATCGATGACATCAAGGACTTGCTCGGTAAATCAATGCTTTTGGAGTTTGTTGCAGCCGAGCTTGATGCAAAGACTGGCTTAGAGAAGAAAACAATCAAAGGGTATGCACGCAAGATTGGCAGAGAGAAGGATGATATGATGTATGAGTTTGACTTTGAGGTGCCCTCAGAATTTGGTGAGATTGGTGCTGTTTTGGTAGAGAATGAGCACCACAAGGAGATGTTCCTCAAGACCATATCACTTGATGGTTTCCCTAATGGCACTATTACTTTCAATTGTGACTCTTGGGTTCATTCCAAAAATGATAATCCAGAGAAAAGGATTTTCTTCACCAACAAGTCGTACTTACCATCAGAGACACCAAGTGGGGTGATGAAGCTAAGAGAAAAAGAATTAACACTTCTTCGAGGAGACGGCACAGGAGAGCGAAAATTCTCGGACAGAATTTATGATTATGATGTTTACAATGATCTTGGTGATCCCGACGAGAGCGATGATCTAGCTAGACCCGTATTAGGTGGTAAGGAGAATCCATACCCTAGGCGTGGCAGAACAGGCCGCCCACAAACCAAGAAAGATCCATTATCTGAGTCAAGGACGACCTTGAATTATGTTCCAAGAGATGAAGGATTCTCAGAGGTGAAGAGCTTAACATTCTCAGCAAAGACACTCTACTCCGTTTTACACGCCGTTTTGCCATCGTTAGAGACGCAGTTCGTGGATCCTGACCTTGGATTCCCTTACTTTACGGCCATAGATTCCCTATTTAACGAAGGCGTAGATTTGCCCGTTAAGATTGAGCCTACTCTCGGGAATCTTATACCTAGAATTATCAAAGACGTTACGGATACAAGAAGGGGTCTCTTGCGGTTTGAGACCCCTGAAATGCTTGACAGAGATAAATTTGCTTGGATGAGGGACGTGGAATTTGGTCGACAAACTTTGGCTGGTCTCAACCCTTACAGTATACAATTGGTGAAGGAATGGCCATTGAAAAGTAAATTGGACCCTTCAGTGTACGGGTCACCAGATTCACTAATCACCAAAGAGGTGGTGGATCGAGCGATCGGAGGCTTCCTGACCCTTGAGGAGGCTTTAAAACAAAAGAAGTTATTCATCCTGGATTACCACGATCTCCTGTTGCCGTATGTTAATATAGTAAGAGAGCAAAAGGGGACAACCTTGTACGGATCGCGGACTTTGTTCTTTCTAACACCAACTGGTACATTAAGGCCAGTAGCCATTGAATTAACTCGGCCACCAGGTAATGGAAAACCTCAATGGAGTAAAGTGTTTACTCCTTGTTGGGATGCCACTGGTGCTTGGCTTTGGAAGCTAGCTAAATCTCATGTCCTCGCCCACGATTCCGGTTATCACCAGCTAGTTAGCCACTGGCTAAGGACCCATTGCGTGACAGAGCCTTACATAATCGCGACAAATAGACAACTTAGTGCAATGCACCCGATTTATAGGTTATTACACCCGCATTTTCGATACACTATGGAGATTAATGCTTTGGCTCGATCAGCTCTCATCAATGCGGGCGGAATTATTGAGTCTGCTTTCTCACCTGGGAAGTACTCTATTCAACTTAGCTCTGCAGCCTATGACTTACAATGGCGTTTCGATACCCAGGCATTACCCGCTGACCTAATTAGCAGGGGAATGGCTGAGGAAGATCCAACAGCACCCCATGGACTCAAGCTAGCAATTGAAGACTACCCTTTTGCTAATGATGGTCTAGTCCTTTATGATGCCATTAAACAATGGGCCACTGACTATGTGACCCACTACTACCCAAATCGAACCCTAGTTGAGTCGGACAATGAGCTTCAGTCTTGGTGGACCGAGATTCGAACCAAAGGCCACGCTGATAAAAAGGACGAACCTTGGTGGCCAGAGCTCAAGACCCCCGATGACCTTATTGGTATCCTCACAACCATAATGTGGGTCACATCGGGGCATCACTCCGCGGTCAACTTCGGCCAGTACACTTACGCGGGTTATTTCCCCAACAGGCCTACGATTGCAAGGACGAAAATCCCCTGCGAGGACCCCACAGACGAGGAGTGGAAGACCTTCGAACTAAGGCCAGAGGACGAGATTTTGTCATGTTTCCCTTCGCAAATACAGGCGACTAAAGTAATGGCGATTTTGGATGTCTTATCGAACCACTCGGTTGATGAGGAGTATATTGGGGCTACTTTGGAGCCTTCTTTTAAGGAGAATCCGGCAATTAATGCCGCATATGAGGTATTTGAGGGGAAGTTAAAAGAGCTTGAAGGGATTATTGATGCAAGGAATAATGATTCAAAATTGAAGAATAGGACTGGGGCTGGTGTTGTACCTTATGAGCTATTGAAGCCTTCTTCTGGGCCTGGGGTTACTTCAAGAGGTGTTCCTAATAGCATTTCCATTTGA

Network for GWHGAAZE008232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	138	200	4.30E-10
PF00305.20	Lipoxygenase	214	879	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	261.807
	SRR3591706	second leaf	462.646
	SRR3591707	mature leaf	1240.361
	SRR3591708	Shoot apex	351.998
	SRR3591709	Stem	66.351
	SRR3591710	White floral bud	442.596
	SRR3591711	White flower	332.142
	SRR3591712	Green floral bud	318.931
	SRR3591713	Yellow flower	127.041
SRP173429	SRR8316895	Juvenile bud stage	126.452
	SRR8316896	Juvenile bud stage	104.796
	SRR8316897	Juvenile bud stage	51.944
	SRR8316894	Third green stage	34.270
	SRR8316900	Third green stage	75.740
	SRR8316901	Third green stage	80.620
	SRR8316898	Complete white stage	29.167
	SRR8316899	Complete white stage	83.758
	SRR8316903	Complete white stage	75.068
	SRR8316902	Silver flowering stage	9.834
	SRR8316904	Silver flowering stage	21.699
	SRR8316905	Silver flowering stage	10.652
	SRR8316906	Gold flowering stage	6.312
	SRR8316907	Gold flowering stage	17.919
	SRR8316908	Gold flowering stage	28.606
SRP132670	SRR6706286	Control	86.661
	SRR6706287	Light intensity 50%	82.285
	SRR6706288	Light intensity 20%	77.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.461
	CNS0095593	Slightly white alabastrum(diploid) 2	50.955
	CNS0095594	Slightly white alabastrum(diploid) 3	58.385
	CNS0095595	Whole white alabastrum(diploid) 2	41.191
	CNS0095596	Whole white alabastrum(diploid) 3	51.504
	CNS0095597	Whole white alabastrum(diploid) 4	74.569
	CNS0095598	Silvery flower (diploied) 1	413.273
	CNS0095599	Silvery flower (diploied) 2	322.777
	CNS0095600	Silvery flower (diploied) 3	86.163
	CNS0095601	Golden flower (diploid) 1	260.789
	CNS0095602	Golden flower (diploid) 2	160.480
	CNS0095603	Golden flower (diploid) 3	157.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.506
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	168.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	110.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.257
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.786
	CNS0095610	Silvery flower (tetraploid) 1	40.571
	CNS0095611	Silvery flower (tetraploid) 2	153.811
	CNS0095612	Silvery flower (tetraploid) 3	81.556
	CNS0095613	Golden flower (tetraploid) 1	27.924
	CNS0095614	Golden flower (tetraploid) 2	89.034
	CNS0095615	Golden flower (tetraploid) 3	19.909
CRA001975	CRR073297	Stem 1	342.469
	CRR073298	Stem 2	289.974
	CRR073299	Stem 3	397.161
	CRR073300	Leaf 1	75.253
	CRR073301	Leaf 2	72.017
	CRR073302	Leaf 3	66.539
	CRR073303	Juvenile bud 1	55.923
	CRR073304	Juvenile bud 2	72.226
	CRR073305	Juvenile bud 3	75.346
	CRR073306	Third green 1	27.331
	CRR073307	Third green 2	29.022
	CRR073308	Third green 3	36.890
	CRR073309	Second white 1	16.324
	CRR073310	Second white 2	7.238
	CRR073311	Second white 3	4.980
	CRR073312	Silver flowering 1	15.093
	CRR073313	Silver flowering 2	16.578
	CRR073314	Silver flowering 3	15.906
	CRR073315	Gold flowering 1	138.048
	CRR073316	Gold flowering 2	269.248
	CRR073317	Gold flowering 3	249.162
	CRR073318	Tawny withering 1	54.210
	CRR073319	Tawny withering 2	52.216
	CRR073320	Tawny withering 3	20.127