Gene detail

Detail information of GWHGAAZE008239

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009143031.1	3.4907E-33	PREDICTED: beta-glucosidase 15-like [Brassica rapa]
Swissprot	tr\|Q9FZE0\|BGL40_ARATH	1E-24	Beta-glucosidase 40 (Precursor)
trEMBL	tr\|M5WF34\|M5WF34_PRUPE	6E-25	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07878.1} (Fragment)
TAIR10	AT1G26560.1	2E-22	beta glucosidase 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	66782681	66789032	+
GWHAAZE00000002	mRNA	66782681	66789032	+
GWHAAZE00000002	exon	66782681	66782782	+
GWHAAZE00000002	exon	66784435	66784471	+
GWHAAZE00000002	exon	66784888	66785007	+
GWHAAZE00000002	exon	66786692	66787036	+
GWHAAZE00000002	exon	66788890	66789032	+
GWHAAZE00000002	CDS	66782681	66782782	+
GWHAAZE00000002	CDS	66784435	66784471	+
GWHAAZE00000002	CDS	66784888	66785007	+
GWHAAZE00000002	CDS	66786692	66787036	+
GWHAAZE00000002	CDS	66788890	66789032	+

Transcript Sequence
>GWHTAAZE008247 ATGCCATCAATTCCAGCCACTGCCATTGAACCTGTTTGTGCACTTAGCCGTGATCGTTTCCCCAGGGGTTTCACCTTTGGTTCAGCTACCTCTGCTTTTCAGTGCGAAGGTGCCACTAATGAAGATGGTAGAGGTCCAAGATTGTTGCTGGGGAATGCTATTGACCAATATCATCGATACAAGGAGGACGTAGCTTTGATGAAGTGGATGGGTTTAGACGCTTACAGATTTTCAATCTCGTGGTCCAGAATATTGCCAAATCCAGTATTATACGGTCATTATCCTGCTCCCGTGCAAGAGGTAATGAAGAAACGCGGTCTTCCGTCGTTTACACAACAGGAATCCAAAATGTTGACTAAATCATTGGATTTTCTGGGAATAAATTACTACACTGCTAGTTATGTGCGTGATGCATCAGATGTCATAATTCCAGGAGGAAAAGAAAGTTACATTACGGATTCAAAGGTTGAATATCCTCCTAAATTTCTTCTTGGTGATGATTGGGGTGCTACTAATTGGCTTAAAGTATATCCAGAAGGAATTAAGGACACTTTGTGTTATGTCAAGGCCAAATATGGAGGTCCCATTTACATCACAGAAAATGGAAAGAAGGATCTGGAATCCGATGTGAATTCCGACCAAGCACTTGGATCCGTGGAAGAAGGAAAGAAGGATCCGGGATCCGATGTGAACTCTGACCAGGCACTTGGATCGAAGAAGGAAAGAAGGATCCAGGATCCGATGTGA

Network for GWHGAAZE008239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0058

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	17	46	1.20E-08
PF00232.19	Glyco_hydro_1	88	208	2.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.005
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.030
	SRR3591708	Shoot apex	37.563
	SRR3591709	Stem	0.195
	SRR3591710	White floral bud	10.412
	SRR3591711	White flower	53.504
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	111.221
SRP173429	SRR8316895	Juvenile bud stage	25.117
	SRR8316896	Juvenile bud stage	14.375
	SRR8316897	Juvenile bud stage	5.013
	SRR8316894	Third green stage	3.045
	SRR8316900	Third green stage	16.412
	SRR8316901	Third green stage	34.556
	SRR8316898	Complete white stage	98.530
	SRR8316899	Complete white stage	20.642
	SRR8316903	Complete white stage	138.458
	SRR8316902	Silver flowering stage	152.568
	SRR8316904	Silver flowering stage	165.675
	SRR8316905	Silver flowering stage	84.056
	SRR8316906	Gold flowering stage	142.337
	SRR8316907	Gold flowering stage	135.838
	SRR8316908	Gold flowering stage	133.195
SRP132670	SRR6706286	Control	42.790
	SRR6706287	Light intensity 50%	88.901
	SRR6706288	Light intensity 20%	63.754
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.689
	CNS0095593	Slightly white alabastrum(diploid) 2	2.133
	CNS0095594	Slightly white alabastrum(diploid) 3	5.521
	CNS0095595	Whole white alabastrum(diploid) 2	4.252
	CNS0095596	Whole white alabastrum(diploid) 3	7.164
	CNS0095597	Whole white alabastrum(diploid) 4	4.705
	CNS0095598	Silvery flower (diploied) 1	15.501
	CNS0095599	Silvery flower (diploied) 2	17.796
	CNS0095600	Silvery flower (diploied) 3	286.888
	CNS0095601	Golden flower (diploid) 1	12.409
	CNS0095602	Golden flower (diploid) 2	78.418
	CNS0095603	Golden flower (diploid) 3	81.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.230
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.119
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.140
	CNS0095610	Silvery flower (tetraploid) 1	387.872
	CNS0095611	Silvery flower (tetraploid) 2	722.192
	CNS0095612	Silvery flower (tetraploid) 3	556.429
	CNS0095613	Golden flower (tetraploid) 1	102.996
	CNS0095614	Golden flower (tetraploid) 2	101.215
	CNS0095615	Golden flower (tetraploid) 3	243.133
CRA001975	CRR073297	Stem 1	20.920
	CRR073298	Stem 2	15.076
	CRR073299	Stem 3	11.874
	CRR073300	Leaf 1	8.490
	CRR073301	Leaf 2	7.681
	CRR073302	Leaf 3	12.291
	CRR073303	Juvenile bud 1	7.679
	CRR073304	Juvenile bud 2	115.845
	CRR073305	Juvenile bud 3	12.778
	CRR073306	Third green 1	241.457
	CRR073307	Third green 2	37.014
	CRR073308	Third green 3	89.996
	CRR073309	Second white 1	88.273
	CRR073310	Second white 2	62.271
	CRR073311	Second white 3	83.347
	CRR073312	Silver flowering 1	15.799
	CRR073313	Silver flowering 2	9.254
	CRR073314	Silver flowering 3	21.725
	CRR073315	Gold flowering 1	0.114
	CRR073316	Gold flowering 2	0.024
	CRR073317	Gold flowering 3	0.397
	CRR073318	Tawny withering 1	2.131
	CRR073319	Tawny withering 2	7.050
	CRR073320	Tawny withering 3	1.194