Detail information of GWHGAAZE008246


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP21267.11.32709E-48unnamed protein product [Coffea canephora]
trEMBLtr|A0A068VKZ4|A0A068VKZ4_COFCA5E-49Coffea canephora DH200=94 genomic scaffold, scaffold_3014 {ECO:0000313|EMBL:CDP21267.1}
TAIR10AT2G47300.32E-32ribonuclease Ps

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6726617367268288-
GWHAAZE00000002mRNA6726617367268288-
GWHAAZE00000002exon6726617367266371-
GWHAAZE00000002exon6726726067267430-
GWHAAZE00000002exon6726813767268288-
GWHAAZE00000002CDS6726813767268288-
GWHAAZE00000002CDS6726726067267430-
GWHAAZE00000002CDS6726617367266371-
Transcript Sequence

Network for GWHGAAZE008246

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01164POP1 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.812
SRR3591706second leaf1.979
SRR3591707mature leaf1.914
SRR3591708Shoot apex10.450
SRR3591709Stem4.908
SRR3591710White floral bud2.281
SRR3591711White flower10.490
SRR3591712Green floral bud7.727
SRR3591713Yellow flower3.862
SRP173429 SRR8316895Juvenile bud stage 5.355
SRR8316896Juvenile bud stage 5.442
SRR8316897Juvenile bud stage 2.308
SRR8316894Third green stage 2.413
SRR8316900Third green stage 5.022
SRR8316901Third green stage 5.644
SRR8316898Complete white stage 0.129
SRR8316899Complete white stage 4.133
SRR8316903Complete white stage 0.805
SRR8316902Silver flowering stage1.831
SRR8316904Silver flowering stage1.389
SRR8316905Silver flowering stage0.456
SRR8316906Gold flowering stage 2.681
SRR8316907Gold flowering stage 2.386
SRR8316908Gold flowering stage 2.829
SRP132670SRR6706286Control3.176
SRR6706287Light intensity 50%2.673
SRR6706288Light intensity 20%3.177
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.883
CNS0095593Slightly white alabastrum(diploid) 25.598
CNS0095594Slightly white alabastrum(diploid) 34.621
CNS0095595Whole white alabastrum(diploid) 26.722
CNS0095596Whole white alabastrum(diploid) 35.855
CNS0095597Whole white alabastrum(diploid) 44.390
CNS0095598Silvery flower (diploied) 16.737
CNS0095599Silvery flower (diploied) 24.989
CNS0095600Silvery flower (diploied) 33.893
CNS0095601Golden flower (diploid) 14.889
CNS0095602Golden flower (diploid) 23.110
CNS0095603Golden flower (diploid) 32.466
CNS0095604Slightly white alabastrum(tetraploid) 16.142
CNS0095605Slightly white alabastrum(tetraploid) 210.569
CNS0095606Slightly white alabastrum(tetraploid) 39.885
CNS0095607Whole white alabastrum(tetraploid) 14.061
CNS0095608Whole white alabastrum(tetraploid) 24.136
CNS0095609Whole white alabastrum(tetraploid) 35.308
CNS0095610Silvery flower (tetraploid) 14.864
CNS0095611Silvery flower (tetraploid) 26.874
CNS0095612Silvery flower (tetraploid) 38.343
CNS0095613Golden flower (tetraploid) 14.817
CNS0095614Golden flower (tetraploid) 25.615
CNS0095615Golden flower (tetraploid) 32.804
CRA001975CRR073297Stem 13.828
CRR073298Stem 23.044
CRR073299Stem 35.916
CRR073300Leaf 11.418
CRR073301Leaf 22.604
CRR073302Leaf 31.788
CRR073303Juvenile bud 12.247
CRR073304Juvenile bud 20.910
CRR073305Juvenile bud 32.322
CRR073306Third green 10.000
CRR073307Third green 20.791
CRR073308Third green 30.000
CRR073309Second white 11.028
CRR073310Second white 20.600
CRR073311Second white 31.267
CRR073312Silver flowering 10.842
CRR073313Silver flowering 20.646
CRR073314Silver flowering 30.895
CRR073315Gold flowering 15.228
CRR073316Gold flowering 24.160
CRR073317Gold flowering 30.767
CRR073318Tawny withering 12.684
CRR073319Tawny withering 24.393
CRR073320Tawny withering 34.535