Detail information of GWHGAAZE008247


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656988.10PREDICTED: ribonucleases P/MRP protein subunit POP1 isoform X2 [Vitis vinifera]
trEMBLtr|F6H5E9|F6H5E9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47298.1}
TAIR10AT2G47300.23E-101ribonuclease Ps

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6726863667273080-
GWHAAZE00000002mRNA6726863667273080-
GWHAAZE00000002exon6727255967273080-
GWHAAZE00000002exon6727210167272197-
GWHAAZE00000002exon6727177467271872-
GWHAAZE00000002exon6727149167271685-
GWHAAZE00000002exon6727125867271376-
GWHAAZE00000002exon6727035367270787-
GWHAAZE00000002exon6726983667269905-
GWHAAZE00000002exon6726863667268770-
GWHAAZE00000002five_prime_UTR6727300567273080-
GWHAAZE00000002CDS6727255967273004-
GWHAAZE00000002CDS6727210167272197-
GWHAAZE00000002CDS6727177467271872-
GWHAAZE00000002CDS6727149167271685-
GWHAAZE00000002CDS6727125867271376-
GWHAAZE00000002CDS6727035367270787-
GWHAAZE00000002CDS6726983667269905-
GWHAAZE00000002CDS6726863667268770-
Transcript Sequence

Network for GWHGAAZE008247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06978.12POP11201792.40E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01164POP1 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.145
SRR3591706second leaf0.629
SRR3591707mature leaf1.255
SRR3591708Shoot apex3.760
SRR3591709Stem1.806
SRR3591710White floral bud2.416
SRR3591711White flower5.556
SRR3591712Green floral bud4.011
SRR3591713Yellow flower1.806
SRP173429 SRR8316895Juvenile bud stage 2.677
SRR8316896Juvenile bud stage 4.379
SRR8316897Juvenile bud stage 1.846
SRR8316894Third green stage 1.962
SRR8316900Third green stage 3.712
SRR8316901Third green stage 2.584
SRR8316898Complete white stage 0.136
SRR8316899Complete white stage 3.472
SRR8316903Complete white stage 1.008
SRR8316902Silver flowering stage0.635
SRR8316904Silver flowering stage1.421
SRR8316905Silver flowering stage0.459
SRR8316906Gold flowering stage 1.384
SRR8316907Gold flowering stage 2.254
SRR8316908Gold flowering stage 1.836
SRP132670SRR6706286Control3.362
SRR6706287Light intensity 50%2.857
SRR6706288Light intensity 20%3.260
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.260
CNS0095593Slightly white alabastrum(diploid) 21.344
CNS0095594Slightly white alabastrum(diploid) 30.940
CNS0095595Whole white alabastrum(diploid) 21.440
CNS0095596Whole white alabastrum(diploid) 30.905
CNS0095597Whole white alabastrum(diploid) 41.439
CNS0095598Silvery flower (diploied) 11.696
CNS0095599Silvery flower (diploied) 22.453
CNS0095600Silvery flower (diploied) 31.498
CNS0095601Golden flower (diploid) 12.049
CNS0095602Golden flower (diploid) 21.837
CNS0095603Golden flower (diploid) 31.789
CNS0095604Slightly white alabastrum(tetraploid) 11.968
CNS0095605Slightly white alabastrum(tetraploid) 21.698
CNS0095606Slightly white alabastrum(tetraploid) 37.249
CNS0095607Whole white alabastrum(tetraploid) 10.297
CNS0095608Whole white alabastrum(tetraploid) 20.716
CNS0095609Whole white alabastrum(tetraploid) 34.429
CNS0095610Silvery flower (tetraploid) 14.241
CNS0095611Silvery flower (tetraploid) 25.020
CNS0095612Silvery flower (tetraploid) 34.170
CNS0095613Golden flower (tetraploid) 11.864
CNS0095614Golden flower (tetraploid) 24.063
CNS0095615Golden flower (tetraploid) 32.350
CRA001975CRR073297Stem 13.111
CRR073298Stem 22.118
CRR073299Stem 32.165
CRR073300Leaf 11.539
CRR073301Leaf 21.597
CRR073302Leaf 31.283
CRR073303Juvenile bud 11.287
CRR073304Juvenile bud 20.869
CRR073305Juvenile bud 31.629
CRR073306Third green 10.095
CRR073307Third green 20.150
CRR073308Third green 30.327
CRR073309Second white 10.360
CRR073310Second white 21.041
CRR073311Second white 30.689
CRR073312Silver flowering 10.389
CRR073313Silver flowering 20.691
CRR073314Silver flowering 30.286
CRR073315Gold flowering 11.439
CRR073316Gold flowering 23.283
CRR073317Gold flowering 30.387
CRR073318Tawny withering 11.117
CRR073319Tawny withering 20.973
CRR073320Tawny withering 31.920