Detail information of GWHGAAZE008263


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002531646.13.65045E-60formate-tetrahydrofolate ligase, putative [Ricinus communis]
Swissprottr|P28723|FTHS_SPIOL9E-57Formate--tetrahydrofolate ligase
trEMBLtr|B9T077|B9T077_RICCO1E-60Formate-tetrahydrofolate ligase, putative {ECO:0000313|EMBL:EEF30742.1}
TAIR10AT1G50480.11E-4610-formyltetrahydrofolate synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6770869467709776-
GWHAAZE00000002mRNA6770869467709776-
GWHAAZE00000002exon6770961267709776-
GWHAAZE00000002exon6770869467708870-
GWHAAZE00000002CDS6770961267709776-
GWHAAZE00000002CDS6770869467708870-
Transcript Sequence

Network for GWHGAAZE008263

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01268.20FTHFS191071.20E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01938fhs Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Carbon fixation pathways in prokaryotesmap00720
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0004329molecular_functionformate-tetrahydrofolate ligase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf107.529
SRR3591706second leaf83.359
SRR3591707mature leaf85.082
SRR3591708Shoot apex49.906
SRR3591709Stem51.706
SRR3591710White floral bud64.595
SRR3591711White flower68.847
SRR3591712Green floral bud50.942
SRR3591713Yellow flower66.752
SRP173429 SRR8316895Juvenile bud stage 35.235
SRR8316896Juvenile bud stage 40.523
SRR8316897Juvenile bud stage 24.340
SRR8316894Third green stage 20.720
SRR8316900Third green stage 65.495
SRR8316901Third green stage 50.220
SRR8316898Complete white stage 24.457
SRR8316899Complete white stage 67.686
SRR8316903Complete white stage 37.085
SRR8316902Silver flowering stage16.614
SRR8316904Silver flowering stage25.918
SRR8316905Silver flowering stage9.624
SRR8316906Gold flowering stage 57.036
SRR8316907Gold flowering stage 46.575
SRR8316908Gold flowering stage 71.805
SRP132670SRR6706286Control76.800
SRR6706287Light intensity 50%68.330
SRR6706288Light intensity 20%63.988
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.651
CNS0095593Slightly white alabastrum(diploid) 211.501
CNS0095594Slightly white alabastrum(diploid) 314.953
CNS0095595Whole white alabastrum(diploid) 214.159
CNS0095596Whole white alabastrum(diploid) 324.255
CNS0095597Whole white alabastrum(diploid) 414.995
CNS0095598Silvery flower (diploied) 145.021
CNS0095599Silvery flower (diploied) 236.102
CNS0095600Silvery flower (diploied) 382.179
CNS0095601Golden flower (diploid) 129.610
CNS0095602Golden flower (diploid) 279.190
CNS0095603Golden flower (diploid) 383.822
CNS0095604Slightly white alabastrum(tetraploid) 124.322
CNS0095605Slightly white alabastrum(tetraploid) 216.902
CNS0095606Slightly white alabastrum(tetraploid) 359.878
CNS0095607Whole white alabastrum(tetraploid) 117.710
CNS0095608Whole white alabastrum(tetraploid) 210.175
CNS0095609Whole white alabastrum(tetraploid) 359.203
CNS0095610Silvery flower (tetraploid) 177.958
CNS0095611Silvery flower (tetraploid) 285.857
CNS0095612Silvery flower (tetraploid) 359.295
CNS0095613Golden flower (tetraploid) 126.355
CNS0095614Golden flower (tetraploid) 263.069
CNS0095615Golden flower (tetraploid) 348.457
CRA001975CRR073297Stem 131.564
CRR073298Stem 239.460
CRR073299Stem 336.861
CRR073300Leaf 136.811
CRR073301Leaf 233.070
CRR073302Leaf 339.099
CRR073303Juvenile bud 138.331
CRR073304Juvenile bud 243.787
CRR073305Juvenile bud 361.740
CRR073306Third green 114.097
CRR073307Third green 219.706
CRR073308Third green 319.841
CRR073309Second white 133.658
CRR073310Second white 223.422
CRR073311Second white 324.046
CRR073312Silver flowering 127.159
CRR073313Silver flowering 231.007
CRR073314Silver flowering 328.280
CRR073315Gold flowering 138.288
CRR073316Gold flowering 238.215
CRR073317Gold flowering 356.832
CRR073318Tawny withering 134.472
CRR073319Tawny withering 221.507
CRR073320Tawny withering 322.072