Gene detail

Detail information of GWHGAAZE008272

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010645104.1	PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X4 [Vitis vinifera]
Swissprot	tr\|Q39548\|KSB_CUCMA	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|D7T123\|D7T123_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24150.3}
TAIR10	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	68025483	68030171	-
GWHAAZE00000002	mRNA	68025483	68030171	-
GWHAAZE00000002	exon	68030052	68030171	-
GWHAAZE00000002	exon	68029641	68029932	-
GWHAAZE00000002	exon	68029354	68029534	-
GWHAAZE00000002	exon	68028531	68028757	-
GWHAAZE00000002	exon	68028303	68028423	-
GWHAAZE00000002	exon	68028094	68028218	-
GWHAAZE00000002	exon	68027790	68028016	-
GWHAAZE00000002	exon	68027559	68027677	-
GWHAAZE00000002	exon	68026778	68026993	-
GWHAAZE00000002	exon	68026497	68026638	-
GWHAAZE00000002	exon	68025953	68026198	-
GWHAAZE00000002	exon	68025483	68025821	-
GWHAAZE00000002	CDS	68030052	68030171	-
GWHAAZE00000002	CDS	68029641	68029932	-
GWHAAZE00000002	CDS	68029354	68029534	-
GWHAAZE00000002	CDS	68028531	68028757	-
GWHAAZE00000002	CDS	68028303	68028423	-
GWHAAZE00000002	CDS	68028094	68028218	-
GWHAAZE00000002	CDS	68027790	68028016	-
GWHAAZE00000002	CDS	68027559	68027677	-
GWHAAZE00000002	CDS	68026778	68026993	-
GWHAAZE00000002	CDS	68026497	68026638	-
GWHAAZE00000002	CDS	68025953	68026198	-
GWHAAZE00000002	CDS	68025483	68025821	-

Transcript Sequence
>GWHTAAZE008280 ATGTTTATGGGATTCTTAATTGCCTTTGAACAAACACCTTTGGCTTTTCTCACATTTTCTTTTCAAACAGTATCTTCCCATGATGGGGTTAAAATAGCGACAGAAGCTAATACTGTCCTGACGAGCTCTGAAGTGATCAAAGAAAGAATTAGGAAACTGTTTAGTAATGAGGTTGAGCTTTCCGTTTCTTCATATGACACCGCATGGGTAGCTATGGTTCCTTCTCCAAATTACTCGCTAGAGCCTTGTTTTCCGGAGTGCGTAGATTGGTTGTTGGATAATCAGCTTGCGGATGGCTTGTGGGGTCTGCCTCGTTACAGTCCCTTATTACTCAAAGACACTCTTTCGTCTACTTTAGCAAGTATCCTCGCACTCAAGCGATGGGGTGTTGGTGAAGACCGTATTAACAAGGGTCTGCATTTTATGGAGTTGAATTTCCCTTCAGCTATTGATAAGAGTCAACATTCTCCAATTGGATTTGACATCATATTTCCTGGTATGCTTGATTATGCTAAAGATTTGGATTTGAAGCTCCCTTTTGAACCAACAGTTTTGAATGCAATGCTTCGTAATAGAGACTTGGAGCTCAAGAGATGTTATGAGTGGCTGCCAGATGAGAGGGACGCCTATCTGGCATATGTTTCAGAAGGAATGCTGAAATTACAGGACTGGGAAGTGGTGATGAAGAAATATCAGAGAAAGAATGGATCACTTTTCAATTCACCAGCCACTACAGCTGCTGCTCTAACTCATCATCATCATCATGGTGCTGGCTGTCTTAATTATATTCGCTCGCTGTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCAGTAGATATTTATGTACGCCTCTGCATGATTGACAATCTTGAAAGGCTTGGAATTGATTGGCATTTTAAGGAGGAAATTCGAAATGTGTTGGATGAAACGTACAGTAACATAACATTATACCCAAAATATAGCTGTTGGCTGCAGGGGGGTGAACAAATATTTATGGATGTCGCAACTTGTGCAATAGCGTTTAGGGTACTACGGATGAATGGATATGATGTCTCTTCAGATCCTTTAACTCAAATTGCCAAGGAAGGGAGTTATTTTAATTCACTTGGTGGACATCTGAAGGGCATAACTAATGCACTCGAACTATATAGGGCGTCACAGATGATTATATCTCCAGATGAATCCGCTTTGAGAAAGCAAAACTTGCAGTCGAGTCATTTCCTCCAACAAACTTTATCTAATGGTTCAGTTTGGTCGGATAGACTTTCTAAATATATTTTCGAAGAGGTGGATGATGCTCTTAACTTTCCGCTCAGTTCAAGCTTAGAGCGCCTGGCTAGCAGGAGATATATAGAGCATTACAACAGAGACTGTAGTACTATAAGAGTCCTAAAGACTTCGTATTGGTGGGTGATAGAGAGCAGACTGGACAAGCTGAAGTTTGGGAGGCAGAAGACAGCATATTGTAGCTTCTCTGCAGCGGCAACCCTTTTCACACCTGAACTATCAGAGGCGCGTATGGCATGGACCAAAAATGGAGTGCTCACTGCTCTGATTGATGACTTTTTTGATGTTGGTGGTTCCGCAGAGGAACATCTCAACCTCGTTCACTTGGTTGAAAAATGGGATGTAGATATAGAATCTGATTGCTGTTTTGAGGAAGTTCGGATCCTTTTCTCAGCGCTTCACGGCGCAATTAGTGAGATTGCAGACCAAGCATTCATACGTCAAGGTCGCGATGTGACTAGCCACTTAGTTGAGATTTGGATGGATTTGCTGAAGGCTTGGTTGATAGAAGCTGAATATCGGTCTAGAAACAATATGCCAACCATGGATGAATATCTGGAAAATAGTCATGTAACCTATGCCTTGGGCCCAATTGTAATTCCAGCGCTGTATCTAGTGGGGCCGGAGCTGTCAGAGGAGGCTGCTCGAAGTTCTGAACTAAAAAAGTTATGTAGGCTTTCGGGCAATTATGGGCGCCTTCTCAATGATATCCAAACCTTCAAGAGGGAAATGAGCCAAGGTAAACAAGTGAATGCGATATTGTTGCGCATGATTCATAGTGGCAGAACTATTACAAAAGAAGAGGCTATTGAAGAGACGAAGAGGTTCATCGAAAGTCAAATGGAGGAATTGCTGAATCTATTAGTGAAGGAGAAGGGGAGCATAGTACCGCGAGCTTGCAAGGAATTGTGGTGGAAAATGGCAAAAGTTTCGCATCTATTCTACCTCAAGGACGACGGATTCACTTCCCCCCAAACCATGGTGAAGTATGTCGAGGATGTTATTTATGAACCCATTGCACGCCTGTGGGGTGGGGTGGGGTGGGGGGCATGCCCTTGGTGA

Network for GWHGAAZE008272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	223	436	8.00E-40
PF03936.17	Terpene_synth_C	467	713	1.10E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0000287	molecular_function	magnesium ion binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.938
	SRR3591706	second leaf	0.015
	SRR3591707	mature leaf	0.075
	SRR3591708	Shoot apex	1.024
	SRR3591709	Stem	1.916
	SRR3591710	White floral bud	3.869
	SRR3591711	White flower	20.055
	SRR3591712	Green floral bud	0.449
	SRR3591713	Yellow flower	22.013
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.028
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.042
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.028
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.100
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.055
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.219
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	0.069
SRP132670	SRR6706286	Control	0.083
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.044
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.032
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.017
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.024
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.030
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.110
	CRR073320	Tawny withering 3	0.000