Gene detail

Detail information of GWHGAAZE008275

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07704.1	3.33001E-28	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7XKV2\|BGL13_ORYSJ	1E-26	Beta-glucosidase 13 (Precursor)
trEMBL	tr\|A0A068UHP5\|A0A068UHP5_COFCA	1E-28	Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313\|EMBL:CDP07704.1}
TAIR10	AT3G18080.1	7E-22	B-S glucosidase 44

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	68160903	68167258	+
GWHAAZE00000002	mRNA	68160903	68167258	+
GWHAAZE00000002	exon	68160903	68161004	+
GWHAAZE00000002	exon	68162648	68162684	+
GWHAAZE00000002	exon	68163105	68163224	+
GWHAAZE00000002	exon	68166112	68166223	+
GWHAAZE00000002	exon	68166862	68167258	+
GWHAAZE00000002	CDS	68160903	68161004	+
GWHAAZE00000002	CDS	68162648	68162684	+
GWHAAZE00000002	CDS	68163105	68163224	+
GWHAAZE00000002	CDS	68166112	68166223	+
GWHAAZE00000002	CDS	68166862	68167258	+

Transcript Sequence
>GWHTAAZE008283 ATGCCATCAATTCCAGCCACTGCCATTGAACCTGTTTGTGCACTTAGCCGTGATCGTTTCCCCAGGGGTTTCACCTTTGGTTCAGCTACCTCTGCTTTTCAGTGCGAAGGTGCCACTAATGAAGATGGTAGAGGTCCAAGATTGTTGCTGGGGAATGCTATTGACCAATATCATCGATACAAGGAGGACGTAGCTTTGATGAAGTGGATGGGTTTAGACGCTTACAGATTTTCAATCTCGTGGTCCAGAATATTGCCAAGGTATGGTGAGATGAATGATGACACTTTAAAACCTCATGAAGCCTTTAACGATGAAAAGAGGGTTTCCTACCACCATCAACACCTTTGTTATGTGGTTCAAGCCATTAATCAGCACGAAGTCGACGTTAAGGGATACTTTTCCTGGTCATTGATGGACAATTTCGAATGGTCTGCTGGCTTTACAACTCGTTTTGGCAATATCTTTATTGATTTTAAAGATAATTTGAAGCGGTACCCTAAATTTTCTGCACATTGGTTCAAATTTATCCTCCGTAAAATTAGCACGAGCTCGGGTGGGCTTATTTCCGCAAATACTAGCCTAACTCGTTCCCTATATATGATCGAAAATGGATTTGTGGAAGAAGGAAAGAAGGATCTGGAATCCGATGTGAATTCCGACCAGGCACTTAGATCCGTGGAAGAAGGAAAGAAGGATCCGGGATCCGATGTGAACTCTGACCAGGCACTTGGATCGAAGAAGGAAAGAAGGATCCAGGATTCGATGTGA

Network for GWHGAAZE008275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0058

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	17	46	1.20E-08
PF00232.19	Glyco_hydro_1	53	96	6.00E-15
PF00232.19	Glyco_hydro_1	100	178	4.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.106
	SRR3591706	second leaf	0.167
	SRR3591707	mature leaf	0.066
	SRR3591708	Shoot apex	86.698
	SRR3591709	Stem	0.255
	SRR3591710	White floral bud	1.870
	SRR3591711	White flower	18.248
	SRR3591712	Green floral bud	0.086
	SRR3591713	Yellow flower	45.073
SRP173429	SRR8316895	Juvenile bud stage	35.333
	SRR8316896	Juvenile bud stage	25.983
	SRR8316897	Juvenile bud stage	10.850
	SRR8316894	Third green stage	4.613
	SRR8316900	Third green stage	14.880
	SRR8316901	Third green stage	35.208
	SRR8316898	Complete white stage	136.560
	SRR8316899	Complete white stage	29.161
	SRR8316903	Complete white stage	165.773
	SRR8316902	Silver flowering stage	229.006
	SRR8316904	Silver flowering stage	200.555
	SRR8316905	Silver flowering stage	99.667
	SRR8316906	Gold flowering stage	184.670
	SRR8316907	Gold flowering stage	184.640
	SRR8316908	Gold flowering stage	188.935
SRP132670	SRR6706286	Control	19.577
	SRR6706287	Light intensity 50%	49.834
	SRR6706288	Light intensity 20%	18.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.503
	CNS0095593	Slightly white alabastrum(diploid) 2	2.743
	CNS0095594	Slightly white alabastrum(diploid) 3	5.601
	CNS0095595	Whole white alabastrum(diploid) 2	2.442
	CNS0095596	Whole white alabastrum(diploid) 3	2.403
	CNS0095597	Whole white alabastrum(diploid) 4	3.756
	CNS0095598	Silvery flower (diploied) 1	40.070
	CNS0095599	Silvery flower (diploied) 2	45.835
	CNS0095600	Silvery flower (diploied) 3	361.934
	CNS0095601	Golden flower (diploid) 1	47.463
	CNS0095602	Golden flower (diploid) 2	103.593
	CNS0095603	Golden flower (diploid) 3	100.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.759
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.809
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.491
	CNS0095610	Silvery flower (tetraploid) 1	535.738
	CNS0095611	Silvery flower (tetraploid) 2	1112.170
	CNS0095612	Silvery flower (tetraploid) 3	889.165
	CNS0095613	Golden flower (tetraploid) 1	176.940
	CNS0095614	Golden flower (tetraploid) 2	154.502
	CNS0095615	Golden flower (tetraploid) 3	380.466
CRA001975	CRR073297	Stem 1	24.279
	CRR073298	Stem 2	21.439
	CRR073299	Stem 3	16.182
	CRR073300	Leaf 1	8.294
	CRR073301	Leaf 2	5.264
	CRR073302	Leaf 3	9.252
	CRR073303	Juvenile bud 1	4.860
	CRR073304	Juvenile bud 2	72.796
	CRR073305	Juvenile bud 3	11.614
	CRR073306	Third green 1	246.083
	CRR073307	Third green 2	41.988
	CRR073308	Third green 3	109.126
	CRR073309	Second white 1	161.171
	CRR073310	Second white 2	91.310
	CRR073311	Second white 3	105.351
	CRR073312	Silver flowering 1	23.573
	CRR073313	Silver flowering 2	12.842
	CRR073314	Silver flowering 3	22.119
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.173
	CRR073318	Tawny withering 1	3.025
	CRR073319	Tawny withering 2	8.568
	CRR073320	Tawny withering 3	3.348