Gene detail

Detail information of GWHGAAZE008291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	3.6814E-103	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-68	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-103	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	1E-58	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	68933457	68934560	+
GWHAAZE00000002	mRNA	68933457	68934560	+
GWHAAZE00000002	exon	68933457	68934560	+
GWHAAZE00000002	CDS	68933457	68934560	+

Transcript Sequence
>GWHTAAZE008299 ATGTTCAACATTCCTAATGATGTTCTCACCGACATACTCTTGGGATTACCGGTAAAGCTTCTCCTTCGATTCAGTTGCGTATCCAAACAATGGCATGCCTTAATTGGCAGCGATGATTTCTTTAAGTTGCATCTTACTCGATCTATAGAAACCAACACAAACGGCTCTATAATTATTAAAGACGGTGATTGCCTCTATTCTATAAACTTGGATTCACTCAACAATGCCGTGAGACTCAATTCCCCACTGATCCATAATAAACATGGTGTGAATGGAACTAGAATAATCGGTTCTTGCAATGGCCTACTCTGTTTGACCAACACGGATGAATGCATTTTCCTGTGGAATCCAGCCACGAGAAAGTACTGGAAATCAGCTGTTTGTAGGATTCCTTTGGGGGTTGAATTTATTGTTTTCGGATTTGGTTATGATGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTACAGTTTTATGGCTATGATGAAGAATCATTTTGGTCTGAGGTTAATTTATACTCTTTGAAATCGGATTCATGGAGAAGAATTGAAGATTTCCCTTATTACATTAGTTACGAGAGGGTTTCTGGTGTGCTTGCTGGTGGTGCTTTGCACTGGGTTGTTAGTCGAAAGCGCAGGAGTTGGGGAGGTCATTCTAGTGCAGATTTGATTGCTTCATTTGATATTAGAAGTGAGGAATATAGGTTGGTACCACAGCCCAAGTATTTGATTAATGACTTTGATATGAATGTGGATGTATTTGAAGGATGTCTGTGCACGCTTTGCAAGTACTCTTTTGAATTTGAGATGTGGGTGATGGAGGATTATGGAGTAGAGAAATCATGGACCAAACTAATTTCGGTTGGATGGCCCAATGTTCATAGGTTCTCTAATATTGTATTGCCTGTTGCGTATTCGAAGAGCCGTGAGGAAGTGCTGTTACAAAACTATCGAGAGTTTATTTGGTATAACCTTACAACAAAAAGAGTCCTGAAAGTTGAGATTGGTGGCATGCCGGAACGTTTTCATTCACGCGTTTGTTTGGAAAGCCTCATTCAACTCAGAGGTGGCGTGGAAGAAAGTTTCAAAAAACAGGTAAATTAA

Network for GWHGAAZE008291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	43	1.10E-06
PF08268.13	FBA_3	202	295	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.244
	SRR3591706	second leaf	3.264
	SRR3591707	mature leaf	4.754
	SRR3591708	Shoot apex	4.921
	SRR3591709	Stem	8.281
	SRR3591710	White floral bud	4.653
	SRR3591711	White flower	3.736
	SRR3591712	Green floral bud	4.910
	SRR3591713	Yellow flower	4.402
SRP173429	SRR8316895	Juvenile bud stage	5.169
	SRR8316896	Juvenile bud stage	8.386
	SRR8316897	Juvenile bud stage	9.218
	SRR8316894	Third green stage	3.354
	SRR8316900	Third green stage	8.424
	SRR8316901	Third green stage	9.812
	SRR8316898	Complete white stage	2.069
	SRR8316899	Complete white stage	8.396
	SRR8316903	Complete white stage	3.309
	SRR8316902	Silver flowering stage	2.410
	SRR8316904	Silver flowering stage	4.101
	SRR8316905	Silver flowering stage	2.016
	SRR8316906	Gold flowering stage	7.306
	SRR8316907	Gold flowering stage	7.894
	SRR8316908	Gold flowering stage	6.253
SRP132670	SRR6706286	Control	4.438
	SRR6706287	Light intensity 50%	4.558
	SRR6706288	Light intensity 20%	4.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.320
	CNS0095593	Slightly white alabastrum(diploid) 2	6.293
	CNS0095594	Slightly white alabastrum(diploid) 3	8.958
	CNS0095595	Whole white alabastrum(diploid) 2	8.910
	CNS0095596	Whole white alabastrum(diploid) 3	8.321
	CNS0095597	Whole white alabastrum(diploid) 4	9.423
	CNS0095598	Silvery flower (diploied) 1	5.374
	CNS0095599	Silvery flower (diploied) 2	5.675
	CNS0095600	Silvery flower (diploied) 3	5.670
	CNS0095601	Golden flower (diploid) 1	8.527
	CNS0095602	Golden flower (diploid) 2	6.434
	CNS0095603	Golden flower (diploid) 3	6.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.587
	CNS0095610	Silvery flower (tetraploid) 1	7.021
	CNS0095611	Silvery flower (tetraploid) 2	8.892
	CNS0095612	Silvery flower (tetraploid) 3	7.983
	CNS0095613	Golden flower (tetraploid) 1	6.528
	CNS0095614	Golden flower (tetraploid) 2	11.004
	CNS0095615	Golden flower (tetraploid) 3	8.385
CRA001975	CRR073297	Stem 1	5.626
	CRR073298	Stem 2	4.967
	CRR073299	Stem 3	2.700
	CRR073300	Leaf 1	4.766
	CRR073301	Leaf 2	3.666
	CRR073302	Leaf 3	2.020
	CRR073303	Juvenile bud 1	3.900
	CRR073304	Juvenile bud 2	1.975
	CRR073305	Juvenile bud 3	2.607
	CRR073306	Third green 1	0.550
	CRR073307	Third green 2	1.545
	CRR073308	Third green 3	0.787
	CRR073309	Second white 1	1.909
	CRR073310	Second white 2	2.789
	CRR073311	Second white 3	1.439
	CRR073312	Silver flowering 1	2.181
	CRR073313	Silver flowering 2	1.753
	CRR073314	Silver flowering 3	1.333
	CRR073315	Gold flowering 1	2.659
	CRR073316	Gold flowering 2	3.394
	CRR073317	Gold flowering 3	1.792
	CRR073318	Tawny withering 1	3.128
	CRR073319	Tawny withering 2	1.349
	CRR073320	Tawny withering 3	4.074