Gene detail

Detail information of GWHGAAZE008305

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	2.9289E-103	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	1E-65	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-103	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	1E-56	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69357148	69358287	+
GWHAAZE00000002	mRNA	69357148	69358287	+
GWHAAZE00000002	exon	69357148	69358287	+
GWHAAZE00000002	CDS	69357148	69358287	+

Transcript Sequence
>GWHTAAZE008313 ATGTCCAAAATTCCTAATGACATTCTCACCGATATTCTCTCGGGATTACCAGTGAAGCTTCTCCGCCGATGCAGTTGCGTATCAAAACAATGGCATACCCTTATTGGCAGCGACGATTTCATTAAGTTGCATCTTACTAGATCTATAGAAACCAACATAAATCGCATTATCGTTATTAAAGACGGTGATAGCCTCTATTCTATAAACTTGGATTCCCTCGACAATGCCGTAAGACTCAATCCCCCACTGAACCTTTACAAACAGAGTGCGAATGGAATTACGATAATCGGTTCTTGCAATGGCCTGCTCTGTTTGACCAACACAGATGAATACATTTTCCTTTGGAATCCAACCACGAGCAAGTACTGGAAATCAGCTCTTTGTAGGATTCCTTTGGGGGTTGAATATGTTGTTTTTGGATTTGGATATGATGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTACAATTTTATGGCAAGGATAAAGAATCATTTAGATCTGAGGTTAGTGTATACTCTTTGAAATCGGATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACCTTAGTTATGAGAGGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGGGTTGTTAGTCGAAAGCGTAGGAGGTTAGAGCGTTTTAGTGGGGATTTAATTGTTGCATTTGATCTTAGAAGTGAGGAATATAGTTTGGTACCCCAGCCTGAGTATTCGATTAAGAACTTTGATATGAAGGTGGATATATTAGAAGGATGTTTGTGTGTGCTCTGCAAGGATTACTCGTTGCAATTTGAGATGTGGGTGATGGAGGATTATGGATTAGAGAAATCATGGACCAAGTTAATTTCATGTTTAGATCCCAATGCTTATTGGTTCCATGATATTGTATTGCCTGTTGCGTATTCGAAGAGCCACAAGCAAATGCTTCTGTTACAAGACTATCGAAAGTTCATTTGGTATGACATTACAACAGAACGAGACGTGAAAGTTGAGATTGATGGCATGCCAAATCGTTTTGATTCACGTGTTTGTTTCGAAAGCCTCATTCAGCCAAGAGGTGGTGTTGAAAGTGCTGGGGGAAATGGAAGAAAGTTTCAAAAAACAGGTAAATTAACATGCTTAACATGA

Network for GWHGAAZE008305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	2	37	4.70E-08
PF08268.13	FBA_3	199	291	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.923
	SRR3591706	second leaf	1.698
	SRR3591707	mature leaf	2.527
	SRR3591708	Shoot apex	3.158
	SRR3591709	Stem	3.079
	SRR3591710	White floral bud	4.048
	SRR3591711	White flower	3.516
	SRR3591712	Green floral bud	3.906
	SRR3591713	Yellow flower	3.913
SRP173429	SRR8316895	Juvenile bud stage	3.516
	SRR8316896	Juvenile bud stage	5.329
	SRR8316897	Juvenile bud stage	1.150
	SRR8316894	Third green stage	2.059
	SRR8316900	Third green stage	6.599
	SRR8316901	Third green stage	5.795
	SRR8316898	Complete white stage	3.609
	SRR8316899	Complete white stage	9.166
	SRR8316903	Complete white stage	5.875
	SRR8316902	Silver flowering stage	3.120
	SRR8316904	Silver flowering stage	6.265
	SRR8316905	Silver flowering stage	2.468
	SRR8316906	Gold flowering stage	10.673
	SRR8316907	Gold flowering stage	8.166
	SRR8316908	Gold flowering stage	6.631
SRP132670	SRR6706286	Control	5.891
	SRR6706287	Light intensity 50%	6.556
	SRR6706288	Light intensity 20%	7.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.247
	CNS0095593	Slightly white alabastrum(diploid) 2	4.728
	CNS0095594	Slightly white alabastrum(diploid) 3	3.096
	CNS0095595	Whole white alabastrum(diploid) 2	3.642
	CNS0095596	Whole white alabastrum(diploid) 3	5.880
	CNS0095597	Whole white alabastrum(diploid) 4	4.580
	CNS0095598	Silvery flower (diploied) 1	5.938
	CNS0095599	Silvery flower (diploied) 2	2.842
	CNS0095600	Silvery flower (diploied) 3	9.064
	CNS0095601	Golden flower (diploid) 1	5.038
	CNS0095602	Golden flower (diploid) 2	8.342
	CNS0095603	Golden flower (diploid) 3	7.691
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.549
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.806
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.113
	CNS0095610	Silvery flower (tetraploid) 1	8.099
	CNS0095611	Silvery flower (tetraploid) 2	10.962
	CNS0095612	Silvery flower (tetraploid) 3	16.382
	CNS0095613	Golden flower (tetraploid) 1	9.099
	CNS0095614	Golden flower (tetraploid) 2	8.773
	CNS0095615	Golden flower (tetraploid) 3	11.619
CRA001975	CRR073297	Stem 1	3.602
	CRR073298	Stem 2	4.935
	CRR073299	Stem 3	4.350
	CRR073300	Leaf 1	5.106
	CRR073301	Leaf 2	2.914
	CRR073302	Leaf 3	3.321
	CRR073303	Juvenile bud 1	4.359
	CRR073304	Juvenile bud 2	2.315
	CRR073305	Juvenile bud 3	4.414
	CRR073306	Third green 1	7.137
	CRR073307	Third green 2	6.716
	CRR073308	Third green 3	5.074
	CRR073309	Second white 1	7.400
	CRR073310	Second white 2	9.269
	CRR073311	Second white 3	7.335
	CRR073312	Silver flowering 1	6.617
	CRR073313	Silver flowering 2	4.384
	CRR073314	Silver flowering 3	3.929
	CRR073315	Gold flowering 1	2.605
	CRR073316	Gold flowering 2	2.962
	CRR073317	Gold flowering 3	2.368
	CRR073318	Tawny withering 1	2.282
	CRR073319	Tawny withering 2	3.632
	CRR073320	Tawny withering 3	1.879