Gene detail

Detail information of GWHGAAZE008306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	3.37553E-86	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	1E-53	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-86	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	5E-47	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69372736	69374862	+
GWHAAZE00000002	mRNA	69372736	69374862	+
GWHAAZE00000002	exon	69372736	69373356	+
GWHAAZE00000002	exon	69373446	69373847	+
GWHAAZE00000002	exon	69374740	69374862	+
GWHAAZE00000002	CDS	69372736	69373356	+
GWHAAZE00000002	CDS	69373446	69373847	+
GWHAAZE00000002	CDS	69374740	69374862	+

Transcript Sequence
>GWHTAAZE008314 ATGTCTGAAGTTCCTAATGACGTTCTCGCCAATATTCTCTCGGGATTACCTGCGAAGCTTCTCCACCGATGCAGTTGCGTATCAAAACAATGGCATACCCTTATTGGCAGTGACGATTTCATTAAGTTGCATCTAACTAGATCTATAGAAACCAACAGAAATCGCATTATCATTATTAAAAACGCAGATTGCCTCTATTCTATAAACTTGAATTCACTTGACAATGCCATAAGACTCAATCCCCCACTGAACCTTAATAAACAGAGTGCGAATGGAACCATGATAATCGGTTCTTGCAATGGCCTGCTCTGTTTGATCAACACGGATGAATACATTTTCCTTTGGAACCCAATCACAAGCAAGTACTGGAAATCAGCTGTTTGTAGGATTCCTTTGGGGGTTGAACATGTTGTTTTCGGATTTGGATATGATGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTACAATTTTTTGGCAAGGATAAAGAATCATTTAGGTCTGAGGTTAGTGTATACTCTTTGAAATCGGATTCGTGGAGAAGGATTGGAGATTTCCCTTATTACCTTAGTTCCAGGAGGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGGGCTCCTGATTATTCGATTAAGAACTTTGATATGAAGGCGGAAGTACTAGAAGGATGTTTGTGTGTGCTCTGCAAGGATTACTCTTCGCAATTTGAGATTTGGGTGATGGAGGATTATGGAGTAGAGAAATCATGGACCAAGTTAATTTCGTGTATAGATCCCAATGTTTATTGGTTCCATGATATTGTATTGCCTGTTGTGTATTGGAAGAGCCGCAAGCAAATGCTTCTGTTACAAGACTATCGAAAGTTTATTTGGAATGACATTACAACAGAAAGAGATGTGAAAGTTGAGATTGATGGCCTGCCAAATCGTTTTGATTCACATGTTTGTTTGGAAAGCCTCGTTCAACCTAGAGGTGGTGTTGAAAGCGCTGGGGGGAGTGGAAGAACGTTAAAAGAAACGAGCGAAGGCGGTGGCCGAAATCGAACAAGATCTGGCCGGAATCGAAGGGGATCTGGCCGGAATTCGCCATTGTTGGTCGTTTTTGTGATGAAGGGGATGAGCAATGAAGAAAAGAGCATATGA

Network for GWHGAAZE008306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	42	2.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.090
	SRR3591706	second leaf	0.106
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.180
	SRR3591709	Stem	0.662
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.065
	SRR3591712	Green floral bud	0.110
	SRR3591713	Yellow flower	0.033
SRP173429	SRR8316895	Juvenile bud stage	0.080
	SRR8316896	Juvenile bud stage	0.575
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.130
	SRR8316900	Third green stage	0.464
	SRR8316901	Third green stage	0.515
	SRR8316898	Complete white stage	0.110
	SRR8316899	Complete white stage	0.702
	SRR8316903	Complete white stage	0.056
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.338
	SRR8316905	Silver flowering stage	0.182
	SRR8316906	Gold flowering stage	0.451
	SRR8316907	Gold flowering stage	0.196
	SRR8316908	Gold flowering stage	0.269
SRP132670	SRR6706286	Control	0.172
	SRR6706287	Light intensity 50%	0.224
	SRR6706288	Light intensity 20%	0.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.588
	CNS0095593	Slightly white alabastrum(diploid) 2	0.274
	CNS0095594	Slightly white alabastrum(diploid) 3	0.023
	CNS0095595	Whole white alabastrum(diploid) 2	0.504
	CNS0095596	Whole white alabastrum(diploid) 3	0.443
	CNS0095597	Whole white alabastrum(diploid) 4	0.248
	CNS0095598	Silvery flower (diploied) 1	0.520
	CNS0095599	Silvery flower (diploied) 2	0.075
	CNS0095600	Silvery flower (diploied) 3	0.131
	CNS0095601	Golden flower (diploid) 1	0.142
	CNS0095602	Golden flower (diploid) 2	0.736
	CNS0095603	Golden flower (diploid) 3	0.392
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.566
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.390
	CNS0095610	Silvery flower (tetraploid) 1	0.275
	CNS0095611	Silvery flower (tetraploid) 2	0.480
	CNS0095612	Silvery flower (tetraploid) 3	0.539
	CNS0095613	Golden flower (tetraploid) 1	0.169
	CNS0095614	Golden flower (tetraploid) 2	0.126
	CNS0095615	Golden flower (tetraploid) 3	0.218
CRA001975	CRR073297	Stem 1	0.339
	CRR073298	Stem 2	0.438
	CRR073299	Stem 3	0.224
	CRR073300	Leaf 1	0.152
	CRR073301	Leaf 2	0.455
	CRR073302	Leaf 3	0.117
	CRR073303	Juvenile bud 1	0.261
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.280
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.344
	CRR073311	Second white 3	0.219
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.277
	CRR073316	Gold flowering 2	0.207
	CRR073317	Gold flowering 3	0.187
	CRR073318	Tawny withering 1	0.689
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.393