Gene detail

Detail information of GWHGAAZE008307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	3.72475E-68	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	4E-39	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-68	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	2E-33	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69433813	69434705	+
GWHAAZE00000002	mRNA	69433813	69434705	+
GWHAAZE00000002	exon	69433813	69434412	+
GWHAAZE00000002	exon	69434502	69434705	+
GWHAAZE00000002	CDS	69433813	69434412	+
GWHAAZE00000002	CDS	69434502	69434705	+

Transcript Sequence
>GWHTAAZE008315 ATGTCTGAAGTTCCTAATGACGTTCTCGCCAATATTCTCTCGGGATTACCTGCGAAGCTTCTCCACCGATGCAGTTGCGTATCAAAACAATGGCATACCCTTATTGGCAGTGACGATTTCATTAAGTTGCATCTGACTAGATCTATAGAAACCAACAGAAATTGCATAATCATTATTAAAGACGCAGATTGCCTCTATTCTATAAACTTGAATTCAAATCCCCCACTGAACCTTAATAAACAGAGTGCGAATGGAACTACGATAATCGGTTCTTGCAATGGCCTGCTCTGTTTGACCAACACGGATGAATACATTTTCCTTTGGAACCCAATCACGAGCAAGTACTGGAAATCAGCTGTTTGTAGGATTCCTTTGGGGGTTATACATGTTGTTTTCGGATTTGGATATGATGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTACAATTTTTTGGCAAGGATAAAGAATCATTTACGTATGAGGTTAGTGTATACTCTTTGAATTCGGATTCGTGGAGAAGGATTGGAGATTTCCCTTATTGCCTTAGTTCCGGGAGGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGTGCTCCTGAGTATTCGATTAAGAACTTTGACATGAAGGTGGATGTATTAGAAGGAAGTCTGTGCGTGCTTTGCAAGGATTACTCGTTGCAATTTGAGATGTGGGTGATGGAGGATTATGGAGTAGAGAAATCATGGACCAAGTTAATTTCGTGTATAGATCCCGATGTTTATTGGTTCCATGATATTGTATTGCCTGTTGCGTATTAG

Network for GWHGAAZE008307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	42	1.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.280
	SRR3591706	second leaf	0.020
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.204
	SRR3591709	Stem	0.245
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.005
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.221
	SRR8316896	Juvenile bud stage	0.240
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.055
	SRR8316900	Third green stage	0.452
	SRR8316901	Third green stage	0.251
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.754
	SRR8316903	Complete white stage	0.357
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.232
	SRR8316905	Silver flowering stage	0.014
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.174
SRP132670	SRR6706286	Control	0.404
	SRR6706287	Light intensity 50%	0.171
	SRR6706288	Light intensity 20%	0.639
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.544
	CNS0095593	Slightly white alabastrum(diploid) 2	0.068
	CNS0095594	Slightly white alabastrum(diploid) 3	0.065
	CNS0095595	Whole white alabastrum(diploid) 2	0.325
	CNS0095596	Whole white alabastrum(diploid) 3	0.425
	CNS0095597	Whole white alabastrum(diploid) 4	0.731
	CNS0095598	Silvery flower (diploied) 1	0.459
	CNS0095599	Silvery flower (diploied) 2	0.315
	CNS0095600	Silvery flower (diploied) 3	0.431
	CNS0095601	Golden flower (diploid) 1	0.062
	CNS0095602	Golden flower (diploid) 2	0.105
	CNS0095603	Golden flower (diploid) 3	0.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.424
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.210
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.074
	CNS0095610	Silvery flower (tetraploid) 1	0.269
	CNS0095611	Silvery flower (tetraploid) 2	0.168
	CNS0095612	Silvery flower (tetraploid) 3	0.256
	CNS0095613	Golden flower (tetraploid) 1	0.569
	CNS0095614	Golden flower (tetraploid) 2	0.474
	CNS0095615	Golden flower (tetraploid) 3	0.101
CRA001975	CRR073297	Stem 1	0.349
	CRR073298	Stem 2	0.050
	CRR073299	Stem 3	0.174
	CRR073300	Leaf 1	1.128
	CRR073301	Leaf 2	0.027
	CRR073302	Leaf 3	0.068
	CRR073303	Juvenile bud 1	0.188
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.071
	CRR073306	Third green 1	0.140
	CRR073307	Third green 2	0.034
	CRR073308	Third green 3	0.353
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.110
	CRR073311	Second white 3	0.090
	CRR073312	Silver flowering 1	0.846
	CRR073313	Silver flowering 2	0.058
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.082
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.537
	CRR073319	Tawny withering 2	0.331
	CRR073320	Tawny withering 3	0.224