Gene detail

Detail information of GWHGAAZE008308

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010665776.1	4.0558E-63	PREDICTED: uncharacterized protein LOC104883035 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	3E-38	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-60	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	4E-32	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69453075	69457027	+
GWHAAZE00000002	mRNA	69453075	69457027	+
GWHAAZE00000002	exon	69453075	69453334	+
GWHAAZE00000002	exon	69453461	69453902	+
GWHAAZE00000002	exon	69453993	69454188	+
GWHAAZE00000002	exon	69454267	69454309	+
GWHAAZE00000002	exon	69454437	69454511	+
GWHAAZE00000002	exon	69455708	69455851	+
GWHAAZE00000002	exon	69456078	69456656	+
GWHAAZE00000002	exon	69456741	69456805	+
GWHAAZE00000002	exon	69456915	69457027	+
GWHAAZE00000002	CDS	69453075	69453334	+
GWHAAZE00000002	CDS	69453461	69453902	+
GWHAAZE00000002	CDS	69453993	69454188	+
GWHAAZE00000002	CDS	69454267	69454309	+
GWHAAZE00000002	CDS	69454437	69454511	+
GWHAAZE00000002	CDS	69455708	69455851	+
GWHAAZE00000002	CDS	69456078	69456656	+
GWHAAZE00000002	CDS	69456741	69456805	+
GWHAAZE00000002	CDS	69456915	69457027	+

Transcript Sequence
>GWHTAAZE008316 ATGTCCGAAGTTCCTAGTGACGTTCACGCCAACATTCTCTCAGGATTACCGGTGAAGCTTCTCCTCCGATTCAGTTTCGTATCAAAACAATGGTGTGCCCTTATTGGCAGTGATGATTTCATTAAGTTGCATCTTACTAGATCCACAGAAACCAACACAAATCTCATTATTATTATTAAAGATGGTGATTGCCTCTATTCTGTAAACTTGGATTCACTAGACAATGCCGTAAGACTCAATCCCCCACTGAACCTTAATAAGATTCTTTTGGGGGTTGAATATATTGTTTTTGGATTTGGATATGGTGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTACAATTTTATGTCAAGGATAAAGAATCATTTAGGGCTGAGGTTAGTGTATACTCTTTGAAATCGAATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACCTTAGTTACAAGAGGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGGGTTGTTAGTCGAAAGCTTAGGTGGTTAGAATGTCCTAGTGGGGATTTAATTGCTGGATTTGATCTTAGAAGTGAGGAATATAGGTTGGTACCACAGCCTGAGTATTCAATTAAGAACTTTGATATGAAGGTGGATGTATTAGGATGTCTGTGCATGCTTTGCAAAAATTACTCATTGCAATTTGAGATGTGGGTGATGGAGGATTATGGATGCCGCAAGGAAATGCTTATGTTACAAGACTATCGAAAGTTTATTTGGTATGATATTACAACAGAAAGAGACGTGACAGTTGAGATTGATGGCACACCAAATCGTTTTGATTCACGTGTTTGTTTGGAAAGCCTCATTCAGCCCAGAGGTGGTGTTGAAAGTGCTGAGGAAAGTGGAAGAATGTTTCACAAAACAGGTCCTGTGTCTCTTATACCTAACTTTTGCAGAAATTTCTCGTGGGGCTCCAAGCTTCATCGAGTTCCTTTAAGCAACTTTGGAGATAATAGAGTACGTAGGAATGAGAAGGCGATGTGTTTGTGCAATCGGCCAACCATTTCCGAAGTTCCTAGTGACGTTCTCGCCAACATTCTCTCAGGATTACCGGTGAGGCTTCTCCTCCGATTCAGTTGCGTAACAAAACAATGGCGTGCCCTTATTGGCAGTGTTGATTTCATAAAGATTCCTTTTGGGGTTGAATATATTGTTTTTGGATTTGTATATGGTGATGCTAAAGATGACTACAAAGTTGTGAGGATGGTAAAATTTTATGGCAAGGATAAAGAATCATTTAGGGCTGAGGTTAGTGTATACTCTTTGAAATCAAATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACCTTAGTTACAAGCGGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGGGTTGTTAGTCGAAAGTGTAGGTGGTTAGAACGTCCTAGTGGGGATTTAATTGCTGCATTTGATCTTAGAAGTGAGGAATATAGGTTGGTACCACAGCCTGAGTATTCAATTAAGAACTTTGATATGAAGGTGGATGTATTAGGATGTCTGTGTGTGCTTTGCAAAAATTACTCATTGCAATTTGAGATGTGGATGATGGAGGATTATGGAGTAAAGAAATCATGGACCAAGTTAATTTCGTGTGTAGATCCCAATGCTTATTGGTTCCATGATATTGTATTGCCTGTTGCGTATTCGAAGTGCCGCAAGGAAATGCTTCTGTTACAAGACTATCGAAAGTTTATTTGCCTCATTCAGCCCAGAGGTCGTGTTGAAAGTGCTGGGGGAAGTGCAAGGAAGTTTCAAAAAACAGAAAATTCTGGTGTTTTATTTAATGCACTTCATGGCTGTTCTAGAATTCTTGCCCTTTTATTGTACATATCAGAAGAGTTGATAATTGTTGGCAATGTTCCTTGTTTCTCTTAG

Network for GWHGAAZE008308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	41	1.10E-05
PF00646.34	F-box	344	384	4.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.021
	SRR3591707	mature leaf	0.019
	SRR3591708	Shoot apex	0.078
	SRR3591709	Stem	0.080
	SRR3591710	White floral bud	0.237
	SRR3591711	White flower	0.130
	SRR3591712	Green floral bud	0.208
	SRR3591713	Yellow flower	0.145
SRP173429	SRR8316895	Juvenile bud stage	0.231
	SRR8316896	Juvenile bud stage	0.176
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.041
	SRR8316900	Third green stage	0.336
	SRR8316901	Third green stage	0.124
	SRR8316898	Complete white stage	0.097
	SRR8316899	Complete white stage	0.257
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.205
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.211
	SRR6706287	Light intensity 50%	0.116
	SRR6706288	Light intensity 20%	0.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.074
	CNS0095593	Slightly white alabastrum(diploid) 2	0.071
	CNS0095594	Slightly white alabastrum(diploid) 3	0.205
	CNS0095595	Whole white alabastrum(diploid) 2	0.142
	CNS0095596	Whole white alabastrum(diploid) 3	0.325
	CNS0095597	Whole white alabastrum(diploid) 4	0.299
	CNS0095598	Silvery flower (diploied) 1	0.117
	CNS0095599	Silvery flower (diploied) 2	0.147
	CNS0095600	Silvery flower (diploied) 3	0.187
	CNS0095601	Golden flower (diploid) 1	0.067
	CNS0095602	Golden flower (diploid) 2	0.041
	CNS0095603	Golden flower (diploid) 3	0.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.282
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.238
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.445
	CNS0095610	Silvery flower (tetraploid) 1	0.028
	CNS0095611	Silvery flower (tetraploid) 2	0.016
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.103
	CNS0095615	Golden flower (tetraploid) 3	0.011
CRA001975	CRR073297	Stem 1	0.054
	CRR073298	Stem 2	0.182
	CRR073299	Stem 3	0.020
	CRR073300	Leaf 1	0.166
	CRR073301	Leaf 2	0.208
	CRR073302	Leaf 3	0.031
	CRR073303	Juvenile bud 1	0.081
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.024
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.317
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.006