Gene detail

Detail information of GWHGAAZE008310

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	3.9259E-109	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	4E-61	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-109	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	4E-53	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69488857	69489981	+
GWHAAZE00000002	mRNA	69488857	69489981	+
GWHAAZE00000002	exon	69488857	69489981	+
GWHAAZE00000002	CDS	69488857	69489981	+

Transcript Sequence
>GWHTAAZE008318 ATGTCCAAAGTTCCTAATGATGTTCTTGCCGACATTCTCTCGAGATTACCGGTGAAGCTTCTCCTCCGATTCAGTTGCATATCAAAACAATGGCGTGCCCTTATTGGCAGCGATGATTTCATTAAGTTGCATCTTACTAGATCTACAGAAACCAACACAAATCGCATTATCATTATTAAAGATGGTGATTGCCTCTATTCTGTAAACTTGGATTCACTCGACAATGCCATAAGACTCAATCCCCCACTGAACCTTAATAAACAGTGTGTGTATGGAACTACGATAATCGGTTCTTGCAATGGCCTGCTCTGTTTGACCAACACGGAGAAATACATTTTCCTGTGGAATCCAACCACGAACAAGTACTGGAAATCAGCTGTTTGTAGGATTCCTTTGGGCATTGAAAATGTTGTTTTCGGATTTGGATATGATGATGCTAAAGATGACTACAAAGTTGTGAGGTTGGTACAATTTTTTGGCAAGGATAAAGAATCATTTAGGTCTGAGGTTAGTGTATACTCTTTGAAATCGGATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACCTTAGTTACGGGAAGGTTTCTGGTGTGCTTGCTAGTGGTGCTTTGCACTGGGCTGTTAGTCGAAAGCGTAGGTGGTTAGATGATCCTAGAGGGGATTTAATCGCTGCATTTGATCTTAGAAGTGAGGAATATAGGTTGGTACCTCAGCCTGAGTATTCGATGAAGAACTTTGATATGAAGGTGGATGTATTAGAAGGATGTCTGTGCGTGCTTTGCAAGGATTACTTGTTGCAATTTGAGATGTGGGTGATGGAGGATTACGGAGTAGAGAAATCATGGACCAAGTTAATTTCGTGTGTAGATCCCAATGTTTATTGGTTCCATGATATTGTATTGCCTGTTGCGTATTCGAAGAGCCGCAAGCAAATGCTTCTGTTACAAGACTATCGAAAGTTCATTTGGTATGACATTACAACAGAAAGAGATGTGAAAGTTGAGATTGATGGCATGCCAAATCGTTTTGATTCACATGTTTGTTTGGAAAGCCTCATTCAGCCTAGTGGTGGTGTTGAAAGTGCTGGGGGGAGTGGAAGAACGTTAAAAAAAAAGGTAAATTAA

Network for GWHGAAZE008310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	42	3.10E-08
PF08268.13	FBA_3	201	287	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.952
	SRR3591706	second leaf	0.403
	SRR3591707	mature leaf	0.197
	SRR3591708	Shoot apex	0.542
	SRR3591709	Stem	1.350
	SRR3591710	White floral bud	0.150
	SRR3591711	White flower	0.114
	SRR3591712	Green floral bud	0.454
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	0.547
	SRR8316896	Juvenile bud stage	0.788
	SRR8316897	Juvenile bud stage	0.135
	SRR8316894	Third green stage	0.376
	SRR8316900	Third green stage	0.994
	SRR8316901	Third green stage	0.859
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	1.233
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.171
	SRR8316904	Silver flowering stage	0.138
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.205
	SRR8316907	Gold flowering stage	0.642
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.456
	SRR6706287	Light intensity 50%	0.728
	SRR6706288	Light intensity 20%	0.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.129
	CNS0095593	Slightly white alabastrum(diploid) 2	0.656
	CNS0095594	Slightly white alabastrum(diploid) 3	0.346
	CNS0095595	Whole white alabastrum(diploid) 2	0.971
	CNS0095596	Whole white alabastrum(diploid) 3	0.618
	CNS0095597	Whole white alabastrum(diploid) 4	0.816
	CNS0095598	Silvery flower (diploied) 1	0.500
	CNS0095599	Silvery flower (diploied) 2	0.649
	CNS0095600	Silvery flower (diploied) 3	0.285
	CNS0095601	Golden flower (diploid) 1	0.289
	CNS0095602	Golden flower (diploid) 2	0.668
	CNS0095603	Golden flower (diploid) 3	0.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.794
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.859
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.498
	CNS0095610	Silvery flower (tetraploid) 1	0.417
	CNS0095611	Silvery flower (tetraploid) 2	0.819
	CNS0095612	Silvery flower (tetraploid) 3	0.227
	CNS0095613	Golden flower (tetraploid) 1	0.393
	CNS0095614	Golden flower (tetraploid) 2	0.254
	CNS0095615	Golden flower (tetraploid) 3	0.116
CRA001975	CRR073297	Stem 1	0.952
	CRR073298	Stem 2	0.632
	CRR073299	Stem 3	0.738
	CRR073300	Leaf 1	0.956
	CRR073301	Leaf 2	0.601
	CRR073302	Leaf 3	0.519
	CRR073303	Juvenile bud 1	0.494
	CRR073304	Juvenile bud 2	0.623
	CRR073305	Juvenile bud 3	0.403
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.221
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.125
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.202
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.349
	CRR073315	Gold flowering 1	0.349
	CRR073316	Gold flowering 2	1.581
	CRR073317	Gold flowering 3	0.801
	CRR073318	Tawny withering 1	0.425
	CRR073319	Tawny withering 2	0.169
	CRR073320	Tawny withering 3	0.776