Detail information of GWHGAAZE008321


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEPS59569.13.25515E-59hypothetical protein M569_15236, partial [Genlisea aurea]
Swissprottr|Q9M5Z9|RS23_EUPES2E-6140S ribosomal protein S23
trEMBLtr|S8BYT7|S8BYT7_9LAMI1E-59Uncharacterized protein {ECO:0000313|EMBL:EPS59569.1} (Fragment)
TAIR10AT5G02960.18E-49Ribosomal protein S12/S23 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6986961269870775-
GWHAAZE00000002mRNA6986961269870775-
GWHAAZE00000002exon6986961269869788-
GWHAAZE00000002exon6987012169870252-
GWHAAZE00000002exon6987044869870574-
GWHAAZE00000002exon6987066669870775-
GWHAAZE00000002CDS6987066669870775-
GWHAAZE00000002CDS6987044869870574-
GWHAAZE00000002CDS6987012169870252-
GWHAAZE00000002CDS6986961269869788-
Transcript Sequence

Network for GWHGAAZE008321

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00164.26Ribosom_S12_S23141139.20E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02973RP-S23e, RPS23 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.570
SRR3591706second leaf5.439
SRR3591707mature leaf5.592
SRR3591708Shoot apex7.080
SRR3591709Stem7.926
SRR3591710White floral bud3.875
SRR3591711White flower3.965
SRR3591712Green floral bud3.976
SRR3591713Yellow flower4.286
SRP173429 SRR8316895Juvenile bud stage 2.038
SRR8316896Juvenile bud stage 1.156
SRR8316897Juvenile bud stage 0.270
SRR8316894Third green stage 0.976
SRR8316900Third green stage 1.497
SRR8316901Third green stage 0.964
SRR8316898Complete white stage 0.266
SRR8316899Complete white stage 1.563
SRR8316903Complete white stage 1.154
SRR8316902Silver flowering stage0.281
SRR8316904Silver flowering stage1.025
SRR8316905Silver flowering stage0.166
SRR8316906Gold flowering stage 1.821
SRR8316907Gold flowering stage 1.748
SRR8316908Gold flowering stage 1.164
SRP132670SRR6706286Control0.072
SRR6706287Light intensity 50%0.023
SRR6706288Light intensity 20%0.082
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.760
CNS0095593Slightly white alabastrum(diploid) 21.617
CNS0095594Slightly white alabastrum(diploid) 31.450
CNS0095595Whole white alabastrum(diploid) 20.498
CNS0095596Whole white alabastrum(diploid) 30.355
CNS0095597Whole white alabastrum(diploid) 41.210
CNS0095598Silvery flower (diploied) 12.653
CNS0095599Silvery flower (diploied) 20.165
CNS0095600Silvery flower (diploied) 30.457
CNS0095601Golden flower (diploid) 10.941
CNS0095602Golden flower (diploid) 20.905
CNS0095603Golden flower (diploid) 31.651
CNS0095604Slightly white alabastrum(tetraploid) 12.224
CNS0095605Slightly white alabastrum(tetraploid) 21.783
CNS0095606Slightly white alabastrum(tetraploid) 34.903
CNS0095607Whole white alabastrum(tetraploid) 12.415
CNS0095608Whole white alabastrum(tetraploid) 21.822
CNS0095609Whole white alabastrum(tetraploid) 33.220
CNS0095610Silvery flower (tetraploid) 11.306
CNS0095611Silvery flower (tetraploid) 22.125
CNS0095612Silvery flower (tetraploid) 33.692
CNS0095613Golden flower (tetraploid) 13.545
CNS0095614Golden flower (tetraploid) 22.399
CNS0095615Golden flower (tetraploid) 31.536
CRA001975CRR073297Stem 11.425
CRR073298Stem 21.026
CRR073299Stem 30.176
CRR073300Leaf 11.861
CRR073301Leaf 20.689
CRR073302Leaf 30.427
CRR073303Juvenile bud 10.049
CRR073304Juvenile bud 20.484
CRR073305Juvenile bud 31.734
CRR073306Third green 10.076
CRR073307Third green 20.080
CRR073308Third green 30.183
CRR073309Second white 10.536
CRR073310Second white 20.030
CRR073311Second white 30.105
CRR073312Silver flowering 10.159
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.155
CRR073315Gold flowering 10.126
CRR073316Gold flowering 20.138
CRR073317Gold flowering 30.006
CRR073318Tawny withering 10.317
CRR073319Tawny withering 21.761
CRR073320Tawny withering 30.664