Gene detail

Detail information of GWHGAAZE008322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008371998.1	8.43578E-19	PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Malus domestica]
Swissprot	tr\|Q7EZT1\|NAC67_ORYSJ	2E-11	NAC domain-containing protein 67
trEMBL	tr\|M5W2D0\|M5W2D0_PRUPE	3E-11	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03403.1} (Fragment)
TAIR10	AT1G34190.1	2E-10	NAC domain containing protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	69908819	69916932	-
GWHAAZE00000002	mRNA	69908819	69916932	-
GWHAAZE00000002	exon	69908819	69908995	-
GWHAAZE00000002	exon	69909174	69909236	-
GWHAAZE00000002	exon	69909509	69909735	-
GWHAAZE00000002	exon	69910075	69910279	-
GWHAAZE00000002	exon	69910471	69910685	-
GWHAAZE00000002	exon	69910771	69910864	-
GWHAAZE00000002	exon	69911245	69911450	-
GWHAAZE00000002	exon	69911746	69911929	-
GWHAAZE00000002	exon	69913637	69913791	-
GWHAAZE00000002	exon	69913884	69913977	-
GWHAAZE00000002	exon	69915038	69915302	-
GWHAAZE00000002	exon	69916700	69916932	-
GWHAAZE00000002	CDS	69916700	69916932	-
GWHAAZE00000002	CDS	69915038	69915302	-
GWHAAZE00000002	CDS	69913884	69913977	-
GWHAAZE00000002	CDS	69913637	69913791	-
GWHAAZE00000002	CDS	69911746	69911929	-
GWHAAZE00000002	CDS	69911245	69911450	-
GWHAAZE00000002	CDS	69910771	69910864	-
GWHAAZE00000002	CDS	69910471	69910685	-
GWHAAZE00000002	CDS	69910075	69910279	-
GWHAAZE00000002	CDS	69909509	69909735	-
GWHAAZE00000002	CDS	69909174	69909236	-
GWHAAZE00000002	CDS	69908915	69908995	-
GWHAAZE00000002	three_prime_UTR	69908819	69908914	-

Transcript Sequence
>GWHTAAZE008330 ATGGAATTGGAGAGAAAACAGAGAGAAGAGCCGCCGGTCGCTTTTGGTTATTGTCCAGCCGAGGGAATATTACTTCGTCAGTACCTCCGTAGCAGATGTGCGGGTCGTGCATTGAAAACCGGCGCCATCGCGGAAGAAGACGTCTACAGTAAACATCCTCAACAGCTCATCGGTAATGGTGGCTTTGTGAAATACTATGTTAATTTTCTTATTGTTTATTGTTTTGATTATGGGTATAATTGTTATTATTATTTTTTCAATGTTTTAACACCCTTTGGCAAGTCCTTGACAGCTATGTATCCGCATATGGGTGAGCATGGTTGGTACTTTTTCACCCATCGCTTTGTAGAGAATCAGGGCCAATGGAGGACTTCTGGCAAAAAGGATTTTGTGTTTTATAAAGGCCAAAGAGTTGGTTCTAAGGAAGTGCTCGAGTTTTTTGAAGAGGGTGAGAAGACCAAGTATAAAATCATCGAGTACAATCTCGAGGGCGATAAGTCTGATGTCTGTGTTTGTAAGCTGTATGAGGATGGCTCGCCGTGTGGCTGTGTGGAGGCTGCTTTAAAAGCAAAATCCATTAAAGATTTTATAGAGGCTTTTACCAAGAGAGCTGCTGAAGTGGATGGAAATCTAAATGATAAATGCAACGAATTGAGGCTGTACTACTGTAAAAACCAGGGATTCCTCGAGGAGTATCATAAGATGGAACAAAGACTTAATCAACTCGAGAAAACCTTTTCGAATGAGATGGAATTGGAGAGTAAAAAAATATGCAATAGACGAGAGCCATCTTTGGGTTTTGTTTTCCGTCCAGCCGATGGAATATTACTTGATCATTACCTCAGGAATAGATGCATTGGCAAAGCTATGGAATATTGCCCCATCGAGATGGAAGTAGACGTCTACGCTAAAGATCCTCAACAGCTCATCGGTATGTACCCACATATGGGTGAGCATGTTTGGTACTTCTTCACCCCTAGCTGTGTAGAGAATCACGGCCAATGGAGGACTTCTGGCAAAAAGGATTTTGTGTTTTATAATGGCCAAAAAGTTGGTTCTAAGCAAGTGCTCGAGTTTTTTGAAGAGGGTGAGAGGACCAAGTATAAAATCATTGAGTACAACCTCGAGCGCGATAAGTCTGATGTTTGTGTTTGTAAGCTGTTTGAGGATGGTTCGTTGTGTAGTTGTGTGGTGTCTGCTTTAAAAGAAGAATCAACTATGGCGACGATGAAGCCTCTTAGCATCCGAGTCCCTTTACGGAAGAAGTTCAAGAACGCGGACGGAGCAGCAGCTTCAGTGGAGAATATTACATTTGAGCGTTTGCAAGATCTAACTGAAAAATGCAACGAACTGAGGCGACGATACATGATAAACCAGGCATCCCTTGAAGAGTATTATGAGGCTGAACGAAGACTTTATTGGCTTTGGAAAGCCTTTTTGAAGAAAACGGAGCTGAAGAGTTTGCAGATAGAACTGAAGAAATGGAAAGAACGGGAAGAAGGATACCAGTCGCTTGGTTTTATTTTCAGGCCAACCGAGGGATTCTTAGTTGATCACTACTTGAGGAAAGCAATCTTGGATGAATTAATGGAAGGATCATGCCCCATTAGTGATATTGGATTTTACCGTTACCATCCTCGTGACCTCACTGAGATCTGCCCACATTCCGGAAAAAATGTTTGGTACTTCTTCAGTCCCTGCCTTCCAGAAAAAGTTTATCAAGGTGCAAATGATCAGGGCCAGTGGAGAATTAATGGCCGAAAGAGTGCTGTGTATCATGAGGGCAAGAAAGTGGGTAACATGCTACTATTGGAGCATTTTGAAGGCAATCAGAAGACCAATTATAAAATCATCCAGTACAAGCTTAAGCACGTTGAGGAAGAATTTTATGTTTATAAGATGTACGAGGACGAGACGACGTGTAGCTGTGAGAAATACCCGGCATGTTCACTTAGGCGAAGGCCAAGGAAGGAGTCTCTTGGACATATTTTGTATCATGGGATACGTGAGTATTATCAATAAGGCTATGTTTGCATGCCGGATTAGGAGGCTATGTTTGTTGCAAATCGGGATAGAATAAAGCACTGGATAAATTATCTTGACTTAGTTTATCCCATG

Network for GWHGAAZE008322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	13	162	1.50E-08
PF02365.16	NAM	266	375	1.90E-15
PF02365.16	NAM	506	621	5.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.549
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	2.262
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.913
	SRR8316896	Juvenile bud stage	11.288
	SRR8316897	Juvenile bud stage	2.833
	SRR8316894	Third green stage	2.229
	SRR8316900	Third green stage	4.974
	SRR8316901	Third green stage	8.536
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.086
	SRR8316903	Complete white stage	0.032
	SRR8316902	Silver flowering stage	0.035
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.698
	SRR6706287	Light intensity 50%	1.441
	SRR6706288	Light intensity 20%	1.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.078
	CNS0095593	Slightly white alabastrum(diploid) 2	5.291
	CNS0095594	Slightly white alabastrum(diploid) 3	12.456
	CNS0095595	Whole white alabastrum(diploid) 2	5.293
	CNS0095596	Whole white alabastrum(diploid) 3	6.259
	CNS0095597	Whole white alabastrum(diploid) 4	4.784
	CNS0095598	Silvery flower (diploied) 1	0.028
	CNS0095599	Silvery flower (diploied) 2	0.073
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.109
	CNS0095602	Golden flower (diploid) 2	0.018
	CNS0095603	Golden flower (diploid) 3	0.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.229
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.259
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.779
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.130
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.361
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	4.331
	CRR073298	Stem 2	3.885
	CRR073299	Stem 3	3.016
	CRR073300	Leaf 1	2.720
	CRR073301	Leaf 2	2.673
	CRR073302	Leaf 3	1.617
	CRR073303	Juvenile bud 1	0.806
	CRR073304	Juvenile bud 2	0.893
	CRR073305	Juvenile bud 3	0.072
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.113
	CRR073308	Third green 3	0.220
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.024
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.107
	CRR073314	Silver flowering 3	0.128
	CRR073315	Gold flowering 1	0.205
	CRR073316	Gold flowering 2	0.027
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.156
	CRR073319	Tawny withering 2	0.043
	CRR073320	Tawny withering 3	0.164