Gene detail

Detail information of GWHGAAZE008348

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009343156.1	2.86877E-78	PREDICTED: protein kinase APK1B, chloroplastic-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	5E-33	Serine/threonine-protein kinase PBS1
trEMBL	tr\|W9QW66\|W9QW66_9ROSA	4E-75	Serine/threonine-protein kinase BIK1 {ECO:0000313\|EMBL:EXB40298.1}
TAIR10	AT2G28590.1	3E-31	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	70741329	70745633	-
GWHAAZE00000002	mRNA	70741329	70745633	-
GWHAAZE00000002	exon	70741329	70741693	-
GWHAAZE00000002	exon	70742156	70742279	-
GWHAAZE00000002	exon	70742722	70742849	-
GWHAAZE00000002	exon	70745157	70745316	-
GWHAAZE00000002	exon	70745409	70745633	-
GWHAAZE00000002	CDS	70745409	70745633	-
GWHAAZE00000002	CDS	70745157	70745316	-
GWHAAZE00000002	CDS	70742722	70742849	-
GWHAAZE00000002	CDS	70742156	70742279	-
GWHAAZE00000002	CDS	70741329	70741693	-

Transcript Sequence
>GWHTAAZE008356 ATGGAGAACGAAAGGTGGTGTAGAGAGCCTATTTCATGTACATCGGAGGTCTTAGAAGCACTGACTGACAATTTCAAGGAAGAAAACTTCATTTCATTAACAACCTATGGTAAGGTGTATCGGGGAAAGGTTAAGCTCGATTCAATTGGAGCCGAAACAAGAGATGTGACCGTAAAGATTTGGGACGAGAAAGTACATGTTATTAATGATGGTAAAGTGGTTGATGAAGAAGTGAGATTCCTATCTCATTTTAGTATGAATCACCACCCCAACTTGGTGAGGTTGATAGGCTTTTCCAGCAATGGCTATCGTTACAAGGGACCAGTAACTGGTGTTGTCTATGATCTCAATTCGTTAGATACTTTGTATAATCACACTCTAAAAGACACTTTCTCTTGGATCCAAAGGATTAAAGTAGCCCTTGAATTTGCAAAGCTACTCGAATATCTGCATAACAGGGAACGGCCGTATGTGGTCTTCAATATTGATTCAACAAATATTATGCTTGATCAGGCCTACAATCCAATATTGATTGACTTTGGGCTGCTCAGTGGTGGGATTATGGGTGGACTACGTTTTGCACAGGAGTTTGGACATATGTCACCAGGCTACTGCGACCCATTTTATGCCAAATGCGGAATGAGGTGCATATGGAGCGACGTGTTTTCATTTGGTTTGATTTTGCTGGGGCTAATAGCTAAGAGAGTTGACTTAAAGGAGGACTTGGAAAAACGCAAGTATCAAAGATTGAATAAGTGGGCTACCGAAGTGTACAAGCACGGGTGCTCGCTTGTGCACCCTAACCTAAGGGAGGACAAGGATTTCGAGGAGTCCGATGGTATCAAGTTGACCGAGCTGGCAATGTGCTGTATACAAGTAGAAAAGGCAGAAGAGCGCCCCTCAATGACTCAAGTTGTCAAGAGCCTTGAGAATTTAAGCGCTTTTCAAGTTCTTAGTGAGTATGCACACAAAGACAAAAGAATGAAACTCGGGGGCAAGTGA

Network for GWHGAAZE008348

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	34	309	3.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.614
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.575
	SRR3591709	Stem	0.353
	SRR3591710	White floral bud	0.934
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.673
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.273
	SRR8316896	Juvenile bud stage	2.372
	SRR8316897	Juvenile bud stage	1.438
	SRR8316894	Third green stage	0.517
	SRR8316900	Third green stage	2.289
	SRR8316901	Third green stage	2.274
	SRR8316898	Complete white stage	0.043
	SRR8316899	Complete white stage	0.264
	SRR8316903	Complete white stage	0.091
	SRR8316902	Silver flowering stage	0.283
	SRR8316904	Silver flowering stage	0.051
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.067
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	2.050
	SRR6706287	Light intensity 50%	3.116
	SRR6706288	Light intensity 20%	2.353
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.717
	CNS0095593	Slightly white alabastrum(diploid) 2	2.120
	CNS0095594	Slightly white alabastrum(diploid) 3	3.651
	CNS0095595	Whole white alabastrum(diploid) 2	4.322
	CNS0095596	Whole white alabastrum(diploid) 3	5.145
	CNS0095597	Whole white alabastrum(diploid) 4	4.481
	CNS0095598	Silvery flower (diploied) 1	0.533
	CNS0095599	Silvery flower (diploied) 2	0.648
	CNS0095600	Silvery flower (diploied) 3	0.447
	CNS0095601	Golden flower (diploid) 1	1.225
	CNS0095602	Golden flower (diploid) 2	0.371
	CNS0095603	Golden flower (diploid) 3	0.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.924
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.213
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.101
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.707
	CNS0095610	Silvery flower (tetraploid) 1	1.612
	CNS0095611	Silvery flower (tetraploid) 2	2.380
	CNS0095612	Silvery flower (tetraploid) 3	1.274
	CNS0095613	Golden flower (tetraploid) 1	0.567
	CNS0095614	Golden flower (tetraploid) 2	0.980
	CNS0095615	Golden flower (tetraploid) 3	0.618
CRA001975	CRR073297	Stem 1	3.645
	CRR073298	Stem 2	3.156
	CRR073299	Stem 3	1.527
	CRR073300	Leaf 1	1.976
	CRR073301	Leaf 2	3.983
	CRR073302	Leaf 3	2.950
	CRR073303	Juvenile bud 1	3.366
	CRR073304	Juvenile bud 2	1.362
	CRR073305	Juvenile bud 3	2.733
	CRR073306	Third green 1	0.944
	CRR073307	Third green 2	0.741
	CRR073308	Third green 3	1.669
	CRR073309	Second white 1	0.500
	CRR073310	Second white 2	0.846
	CRR073311	Second white 3	0.395
	CRR073312	Silver flowering 1	0.333
	CRR073313	Silver flowering 2	0.227
	CRR073314	Silver flowering 3	0.073
	CRR073315	Gold flowering 1	0.443
	CRR073316	Gold flowering 2	0.233
	CRR073317	Gold flowering 3	0.137
	CRR073318	Tawny withering 1	0.712
	CRR073319	Tawny withering 2	0.723
	CRR073320	Tawny withering 3	0.756