Gene detail

Detail information of GWHGAAZE008349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006445820.1	1.3893E-178	hypothetical protein CICLE_v10015516mg [Citrus clementina]
Swissprot	tr\|Q07100\|PP2A4_ARATH	3E-177	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit
trEMBL	tr\|A0A067FA26\|A0A067FA26_CITSI	5E-179	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT2G42500.1	2E-137	protein phosphatase 2A-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	70775723	70782633	+
GWHAAZE00000002	mRNA	70775723	70782633	+
GWHAAZE00000002	exon	70775723	70775779	+
GWHAAZE00000002	exon	70776953	70777036	+
GWHAAZE00000002	exon	70777460	70777535	+
GWHAAZE00000002	exon	70779148	70779226	+
GWHAAZE00000002	exon	70779908	70779980	+
GWHAAZE00000002	exon	70780231	70780271	+
GWHAAZE00000002	exon	70780539	70780578	+
GWHAAZE00000002	exon	70781594	70781785	+
GWHAAZE00000002	exon	70781902	70781991	+
GWHAAZE00000002	exon	70782093	70782200	+
GWHAAZE00000002	exon	70782598	70782633	+
GWHAAZE00000002	CDS	70775723	70775779	+
GWHAAZE00000002	CDS	70776953	70777036	+
GWHAAZE00000002	CDS	70777460	70777535	+
GWHAAZE00000002	CDS	70779148	70779226	+
GWHAAZE00000002	CDS	70779908	70779980	+
GWHAAZE00000002	CDS	70780231	70780271	+
GWHAAZE00000002	CDS	70780539	70780578	+
GWHAAZE00000002	CDS	70781594	70781785	+
GWHAAZE00000002	CDS	70781902	70781991	+
GWHAAZE00000002	CDS	70782093	70782200	+
GWHAAZE00000002	CDS	70782598	70782633	+

Transcript Sequence
>GWHTAAZE008357 GTTAGGGTGTTATGTGAGAAGGCTAAGGAGATTCTAATGGATGAAAGCAATGTCCAGCCTGTGAAAAGCCCTGTGACAATATGCGGTGATATTCATGGGCAATTTCATGATCTTGCGGAGCTTTTTCGGATTGGAGGGAAGTCTCCAGATACAAATTATTTGTTTATGGGAGACTATGTTGATCGAGGCTACTACTCAGTTGAAACAGTAACAGTAACTCTGGTGGTGAGTGGCAGTGGGAAACCTTTGTTGGTGTCCTTCCCTTGGAGCAAGGGGTCTAGTTTACTAACCCATAGCTTCTGGTGGCCCTCAAAGTCACGTTACCCTCAGCGGATTACTATTCTAAGAGGAAATCATGAGAGTCGTCAGATTACTCAAGTGTATGGGTTTTATGATGAATGTCTTAGAAAGTCTTCTGGTTTATTTGATTATTTTCCGCTAACAGCATTGGTTGAGTCGGAAATATTTTGTCTCCATGGTGGTTTATCCCCTTCCATTGAAACTCTTGATAACATACGTAATTTTGACCGCGTCCAAGAAGTTCCTCACGAGGGACCCATGTGTGATCTTTTATGGTCTGACCCCGATGATCGTTGTGGTTGGGGTATCTCCCCAAGGGGTGCCGGTTATACTTTTGGGCAGGATATATCGGAGCAGTTTAACCATACCAACAATTTAAAGCTTATTGCTAGAGCGCATCAGCTAGTTATGGAGGGATACAACTGGGGACATGAACAAAAGGTTGTTACCATTTTTAGTGCACCTAACTATTGTTATCGATGCGGGAACATGGCATCTATTCTGGAAGTTGATGACTGCCAAGGTCATACTTTCATTCAGTTTGAACCAGCACCCAGGAGGGAGAGCCAGATGTAA

Network for GWHGAAZE008349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	24	234	3.60E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04382	PPP2C	mRNA surveillance pathway	map03015
		MAPK signaling pathway - fly	map04013
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.437
	SRR3591706	second leaf	11.887
	SRR3591707	mature leaf	9.189
	SRR3591708	Shoot apex	14.507
	SRR3591709	Stem	14.310
	SRR3591710	White floral bud	15.261
	SRR3591711	White flower	15.020
	SRR3591712	Green floral bud	19.428
	SRR3591713	Yellow flower	9.662
SRP173429	SRR8316895	Juvenile bud stage	5.868
	SRR8316896	Juvenile bud stage	7.792
	SRR8316897	Juvenile bud stage	4.662
	SRR8316894	Third green stage	2.908
	SRR8316900	Third green stage	7.816
	SRR8316901	Third green stage	11.081
	SRR8316898	Complete white stage	3.690
	SRR8316899	Complete white stage	14.267
	SRR8316903	Complete white stage	6.191
	SRR8316902	Silver flowering stage	2.280
	SRR8316904	Silver flowering stage	3.874
	SRR8316905	Silver flowering stage	1.206
	SRR8316906	Gold flowering stage	4.690
	SRR8316907	Gold flowering stage	4.520
	SRR8316908	Gold flowering stage	6.076
SRP132670	SRR6706286	Control	8.887
	SRR6706287	Light intensity 50%	9.662
	SRR6706288	Light intensity 20%	9.467
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.445
	CNS0095593	Slightly white alabastrum(diploid) 2	4.836
	CNS0095594	Slightly white alabastrum(diploid) 3	5.912
	CNS0095595	Whole white alabastrum(diploid) 2	6.583
	CNS0095596	Whole white alabastrum(diploid) 3	7.302
	CNS0095597	Whole white alabastrum(diploid) 4	5.628
	CNS0095598	Silvery flower (diploied) 1	5.116
	CNS0095599	Silvery flower (diploied) 2	6.737
	CNS0095600	Silvery flower (diploied) 3	5.842
	CNS0095601	Golden flower (diploid) 1	4.704
	CNS0095602	Golden flower (diploid) 2	6.344
	CNS0095603	Golden flower (diploid) 3	5.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.960
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.322
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.516
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.360
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.761
	CNS0095610	Silvery flower (tetraploid) 1	11.326
	CNS0095611	Silvery flower (tetraploid) 2	8.070
	CNS0095612	Silvery flower (tetraploid) 3	8.550
	CNS0095613	Golden flower (tetraploid) 1	7.391
	CNS0095614	Golden flower (tetraploid) 2	10.072
	CNS0095615	Golden flower (tetraploid) 3	8.966
CRA001975	CRR073297	Stem 1	10.324
	CRR073298	Stem 2	9.994
	CRR073299	Stem 3	12.708
	CRR073300	Leaf 1	11.447
	CRR073301	Leaf 2	13.854
	CRR073302	Leaf 3	14.291
	CRR073303	Juvenile bud 1	10.558
	CRR073304	Juvenile bud 2	12.342
	CRR073305	Juvenile bud 3	10.927
	CRR073306	Third green 1	6.938
	CRR073307	Third green 2	6.194
	CRR073308	Third green 3	5.832
	CRR073309	Second white 1	6.141
	CRR073310	Second white 2	6.330
	CRR073311	Second white 3	3.948
	CRR073312	Silver flowering 1	4.546
	CRR073313	Silver flowering 2	4.750
	CRR073314	Silver flowering 3	3.029
	CRR073315	Gold flowering 1	5.338
	CRR073316	Gold flowering 2	8.354
	CRR073317	Gold flowering 3	7.632
	CRR073318	Tawny withering 1	11.758
	CRR073319	Tawny withering 2	10.977
	CRR073320	Tawny withering 3	15.090