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Detail information of GWHGAAZE008355
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010651347.1
0
PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Vitis vinifera]
Swissprot
tr|Q9C895|BRE1B_ARATH
0
E3 ubiquitin-protein ligase BRE1-like 2
trEMBL
tr|D7SLF9|D7SLF9_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CBI16487.3}
TAIR10
AT1G55250.3
0
histone mono-ubiquitination 2
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
71326835
71345994
+
GWHAAZE00000002
mRNA
71326835
71345994
+
GWHAAZE00000002
exon
71326835
71326936
+
GWHAAZE00000002
exon
71330617
71330778
+
GWHAAZE00000002
exon
71330864
71330951
+
GWHAAZE00000002
exon
71331030
71331260
+
GWHAAZE00000002
exon
71331387
71331554
+
GWHAAZE00000002
exon
71331985
71332181
+
GWHAAZE00000002
exon
71332268
71332351
+
GWHAAZE00000002
exon
71332484
71332603
+
GWHAAZE00000002
exon
71332712
71332898
+
GWHAAZE00000002
exon
71333310
71333470
+
GWHAAZE00000002
exon
71334727
71334798
+
GWHAAZE00000002
exon
71334893
71334969
+
GWHAAZE00000002
exon
71337866
71338060
+
GWHAAZE00000002
exon
71341278
71341350
+
GWHAAZE00000002
exon
71341443
71341529
+
GWHAAZE00000002
exon
71341908
71342045
+
GWHAAZE00000002
exon
71342126
71342371
+
GWHAAZE00000002
exon
71344064
71344171
+
GWHAAZE00000002
exon
71344519
71344634
+
GWHAAZE00000002
exon
71345919
71345994
+
GWHAAZE00000002
CDS
71326835
71326936
+
GWHAAZE00000002
CDS
71330617
71330778
+
GWHAAZE00000002
CDS
71330864
71330951
+
GWHAAZE00000002
CDS
71331030
71331260
+
GWHAAZE00000002
CDS
71331387
71331554
+
GWHAAZE00000002
CDS
71331985
71332181
+
GWHAAZE00000002
CDS
71332268
71332351
+
GWHAAZE00000002
CDS
71332484
71332603
+
GWHAAZE00000002
CDS
71332712
71332898
+
GWHAAZE00000002
CDS
71333310
71333470
+
GWHAAZE00000002
CDS
71334727
71334798
+
GWHAAZE00000002
CDS
71334893
71334969
+
GWHAAZE00000002
CDS
71337866
71338060
+
GWHAAZE00000002
CDS
71341278
71341350
+
GWHAAZE00000002
CDS
71341443
71341529
+
GWHAAZE00000002
CDS
71341908
71342045
+
GWHAAZE00000002
CDS
71342126
71342371
+
GWHAAZE00000002
CDS
71344064
71344171
+
GWHAAZE00000002
CDS
71344519
71344634
+
GWHAAZE00000002
CDS
71345919
71345994
+
Transcript Sequence
>GWHTAAZE008363 ATGGATAACTCAGATTCAGATGAGCCAGAGAAGAAGCGGCCTCATTTGAATCTCTCCTTTGGCATGGCTCGACACTCGGCCAGTCCACCTGATAGCAAAACTGTTGATGCAGCAACCCTCCAGTACCAGAATCAGAAACTTGTTCAGCAGTTAGATTTGCAGAAGCACGAGTTACATGACCTTGAAGCCAAAATTAAGGAATTAGTAGACAAGCAAACTTCTTATGACGACGTTTTGATTACAGTTAACCAACTATGGAATCAGTTGATTGATGATTTAATCCTGCTTGGAATACGAGCAGGGGCTGGCCAAAATGCGTTGCAAGCCTTGGATCGTGCAGATCATTCTCGAGGTATAATTCCATCATGCTGTGCCGAGGAGATATTTCTTTGTAGAGTATTAGAATCAGATTCTATTGAGAGCGGTGGAAATGATGAATCTCTTGTTTATATTAAAGAAGCACTTGCTTTGCGTCATTCATCTACTCGAGAACTAATGAAGGTTCTGGAAGATACCATTGAATCGCAGAGAGCAAAAACTCAGAGCATAAGTCAGGCTTTGATTGGAAAGCCATCTGCAGAAGATGCTATCATCCACTTGTGTAAGATTGACAATTTGATGAAAGAGGAGGCTAATCATCTGCATAAGGTGATTGATGTTCTTCACCTGAAGCATAAAGAATATGCTGATGGGATCCAAACTTGTATTTACAACAATTCAGTGGATCAATCTGAGATCAAGCGTCTTGCAGGGGAGGTTGAAGAAAGCATGGCAGAACTCGAAGAAAGTAGAAGAAAACTAGTTAACCTAAGAATGCAGAAGGGTGTGGCACCTAGTGTGCAAACTCCAGTTTCAGTTGGTGCGGTAAATGGGAACTTGTCACCTGAAAAGCCTGCAGATAGATCAATGGGTTTGCGGGAATTGAAGGATTCCATTGAGGAAACCAAGATATTGGCAGTTGACCGACTTTCTGAGCTTCAAGAAGCACAGGAGGACAATCAAAACTTATCCAAACAGTTGCATGATCTTCAGAATGAACTGAAGGATGAGAAATACATTTACTCATCTCGACCTTACACATTACTAAACGATCAGCTCCATCATTGGAATACTGAACTGGACCATTACAAAATGCTGACAGATTCTCTGCAGGCTGACAGGTCTTCGGTCCTGCGAAGGGAGAAAGAGGTGAGCATTAAAGCTGATTCGACAGATGCTGTGAGGAATGCCATCAACAGTGCCGAGTCTAAAATTGGAGAACTAGAGCATCAATTGCAAAAGTGCATTATAGAAAGGAATGAATTAGAGATTAAAATGGAAGAGGCTGTGCAAGATTCAGGGAGAAAAGATATTAAAGCAGAGTTTAAAGTGATGGCCTCTGCCCTGTCTAAAGAAATTGGAATGATGGAAGCTCAGTTAAATCGTTGGAAGGAGACAGCTCATGAAGCCCTTTCCTTACGCGAAGAAGCTCAGTCATTGAAAGCTTTATTGGGCAGAAAGACTAGTGAACAGAAGAATTTGGCTGTCAAATGTGCTGAACAGACTGCAGATATCAAATCGCTGAGGGCATTGATTGAAAAGTTGCAGAAGGAAAAAGAAGAACTGCAAATCTTTTTGGATATGCTCGGACAACAAATATATGACAACAGAGACATAATGGAAATCAAAGAATCGGAACAGAGAGCTCACTCTCAAGAAGCACGCTTGAGAAATGCTCTTGAAGAACATGGACTAGAATTGAGAGTGAAATCTGCGAATGAAGCTGAGGCTGCCTGCCAACAGAGACTTTCTGCAGCAGAAGCTGAAATAGTTGACTTAAGGGCCAAACTTGATGCCTCTGAAAGGGATGTGTTGGAACTTACAGAGGCTGTCAAGATTAAAGATGGAGAAGCAGAGAGTTACATTTCCGAAATTGAGACGATCGGTCAAGCCTATGAAGATATGCAGACACAACATCAGCATCTGTTGCAGCAAGTTGCTGAGAGGGACGATTACAATATCAAGCTGGTTTCTGAGAGTGTGAAGGCAAAGCAAGCACAAAGCTCTCTAGTTTCCGAGAAGCAGGTCTTGGAAAAGCAACTTCAACAGGTTAATACATCACTAGATTCTTTGAAAACAAGGATCGATCACTGTGAAGAGCAGATGAAAGTTCACATTATGGAAGCTTTAAAATCTACTCAAGAAGATAGACGCCTTGCAATTAACCTGGAAACTTCAAAGTGGGAACTGACAGATGCTGAGAAGGAATTAAAGTGGCTCAAGTCTGCATTGTCTTCTTCAGAGAAGGAACATGAGCAGATCCGGAGAAAGATGGACGAAATCCAAATGGAATTGGACAGCGAAAGGTGTGTTTATTTCCGCTATATTTTCAAGCTTGTTAGTCTAAAGGAGCTTACTTCAGAAACTGGGGAGGTTGCAATTCAGAAACTCCAGGATGAAATTAAGGATTGCAAATCTATGCTCAAGTGCGGGGTCTGTTTTGATCGCCCAAAGGAGGTTGTAATAGTAAAATGCTATCATCTATTTTGCAATGCATGCATTCAAAGAAACCTAGAGATCCGCCATCGCAAATGCCCTGGTTGTGGGACCGCTTTTGGCCAAAGTGATGTTAGCGAAAACTCTTTGAAAGATGAGGATGGCTCGCGTGCAATCGTACTTCCAAACTACACTCGCTACCCTAAAGCATAG
Network for GWHGAAZE008355
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF13920.7
zf-C3HC4_3
821
864
3.20E-09
Protein Sequence
>GWHPAAZE008359 MDNSDSDEPEKKRPHLNLSFGMARHSASPPDSKTVDAATLQYQNQKLVQQLDLQKHELHDLEAKIKELVDKQTSYDDVLITVNQLWNQLIDDLILLGIRAGAGQNALQALDRADHSRGIIPSCCAEEIFLCRVLESDSIESGGNDESLVYIKEALALRHSSTRELMKVLEDTIESQRAKTQSISQALIGKPSAEDAIIHLCKIDNLMKEEANHLHKVIDVLHLKHKEYADGIQTCIYNNSVDQSEIKRLAGEVEESMAELEESRRKLVNLRMQKGVAPSVQTPVSVGAVNGNLSPEKPADRSMGLRELKDSIEETKILAVDRLSELQEAQEDNQNLSKQLHDLQNELKDEKYIYSSRPYTLLNDQLHHWNTELDHYKMLTDSLQADRSSVLRREKEVSIKADSTDAVRNAINSAESKIGELEHQLQKCIIERNELEIKMEEAVQDSGRKDIKAEFKVMASALSKEIGMMEAQLNRWKETAHEALSLREEAQSLKALLGRKTSEQKNLAVKCAEQTADIKSLRALIEKLQKEKEELQIFLDMLGQQIYDNRDIMEIKESEQRAHSQEARLRNALEEHGLELRVKSANEAEAACQQRLSAAEAEIVDLRAKLDASERDVLELTEAVKIKDGEAESYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQAQSSLVSEKQVLEKQLQQVNTSLDSLKTRIDHCEEQMKVHIMEALKSTQEDRRLAINLETSKWELTDAEKELKWLKSALSSSEKEHEQIRRKMDEIQMELDSERCVYFRYIFKLVSLKELTSETGEVAIQKLQDEIKDCKSMLKCGVCFDRPKEVVIVKCYHLFCNACIQRNLEIRHRKCPGCGTAFGQSDVSENSLKDEDGSRAIVLPNYTRYPKA
Gene family
Gene family
subfamily
Ubiquitin Family
RING
Ubiquitin Family
U-box
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
18.501
SRR3591706
second leaf
12.095
SRR3591707
mature leaf
13.982
SRR3591708
Shoot apex
19.297
SRR3591709
Stem
19.909
SRR3591710
White floral bud
18.974
SRR3591711
White flower
21.253
SRR3591712
Green floral bud
19.974
SRR3591713
Yellow flower
17.914
SRP173429
SRR8316895
Juvenile bud stage
10.799
SRR8316896
Juvenile bud stage
15.415
SRR8316897
Juvenile bud stage
7.917
SRR8316894
Third green stage
6.785
SRR8316900
Third green stage
12.903
SRR8316901
Third green stage
13.072
SRR8316898
Complete white stage
5.064
SRR8316899
Complete white stage
20.090
SRR8316903
Complete white stage
10.892
SRR8316902
Silver flowering stage
6.435
SRR8316904
Silver flowering stage
11.465
SRR8316905
Silver flowering stage
4.630
SRR8316906
Gold flowering stage
16.085
SRR8316907
Gold flowering stage
16.559
SRR8316908
Gold flowering stage
16.403
SRP132670
SRR6706286
Control
13.698
SRR6706287
Light intensity 50%
13.808
SRR6706288
Light intensity 20%
14.161
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
10.840
CNS0095593
Slightly white alabastrum(diploid) 2
9.570
CNS0095594
Slightly white alabastrum(diploid) 3
11.244
CNS0095595
Whole white alabastrum(diploid) 2
9.815
CNS0095596
Whole white alabastrum(diploid) 3
8.845
CNS0095597
Whole white alabastrum(diploid) 4
8.729
CNS0095598
Silvery flower (diploied) 1
14.735
CNS0095599
Silvery flower (diploied) 2
11.378
CNS0095600
Silvery flower (diploied) 3
14.732
CNS0095601
Golden flower (diploid) 1
11.875
CNS0095602
Golden flower (diploid) 2
13.273
CNS0095603
Golden flower (diploid) 3
12.752
CNS0095604
Slightly white alabastrum(tetraploid) 1
13.304
CNS0095605
Slightly white alabastrum(tetraploid) 2
10.866
CNS0095606
Slightly white alabastrum(tetraploid) 3
18.367
CNS0095607
Whole white alabastrum(tetraploid) 1
10.980
CNS0095608
Whole white alabastrum(tetraploid) 2
7.621
CNS0095609
Whole white alabastrum(tetraploid) 3
13.565
CNS0095610
Silvery flower (tetraploid) 1
15.519
CNS0095611
Silvery flower (tetraploid) 2
13.580
CNS0095612
Silvery flower (tetraploid) 3
12.375
CNS0095613
Golden flower (tetraploid) 1
9.080
CNS0095614
Golden flower (tetraploid) 2
12.736
CNS0095615
Golden flower (tetraploid) 3
12.993
CRA001975
CRR073297
Stem 1
19.531
CRR073298
Stem 2
17.597
CRR073299
Stem 3
10.441
CRR073300
Leaf 1
14.974
CRR073301
Leaf 2
14.342
CRR073302
Leaf 3
9.620
CRR073303
Juvenile bud 1
9.439
CRR073304
Juvenile bud 2
6.608
CRR073305
Juvenile bud 3
9.681
CRR073306
Third green 1
4.417
CRR073307
Third green 2
3.340
CRR073308
Third green 3
4.346
CRR073309
Second white 1
2.798
CRR073310
Second white 2
6.131
CRR073311
Second white 3
4.884
CRR073312
Silver flowering 1
4.180
CRR073313
Silver flowering 2
4.462
CRR073314
Silver flowering 3
4.010
CRR073315
Gold flowering 1
6.541
CRR073316
Gold flowering 2
11.846
CRR073317
Gold flowering 3
4.206
CRR073318
Tawny withering 1
12.754
CRR073319
Tawny withering 2
12.320
CRR073320
Tawny withering 3
12.777