Gene detail

Detail information of GWHGAAZE008362

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP17358.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q93W93\|FBK22_ARATH	F-box/kelch-repeat protein At1g55270
trEMBL	tr\|A0A068VCE3\|A0A068VCE3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_155 {ECO:0000313\|EMBL:CDP17358.1}
TAIR10	AT1G55270.1	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	71722416	71723663	-
GWHAAZE00000002	mRNA	71722416	71723663	-
GWHAAZE00000002	exon	71722416	71723663	-
GWHAAZE00000002	CDS	71722416	71723663	-

Transcript Sequence
>GWHTAAZE008370 GTTGATTCAGTTTCATGCTATTGCAAAGTAGATGCTGGCCTAAAAACAGTCGCCGGGGCAAGAAAATTTGTCCCAGGATCCAAAATCTGCATCCAACCTGACATCAATCCCCGTGCCCACAAGACAAAGACCCGCAGAGAACGGACCCGAGTCCAGCCACCCCTCCTGCCCGGCCTGCCCGACGACCTGGCCATTGCGTGTCTGATCCGGGTCCCCCGAGCTGAACACACCAAGCTCCGTCTCGTTTGCAAAAGATGGTACCGCCTTCTGTCCGGAAACTTCTATTATTCCCAAAGAAAGTCTGTTGGAATGGCCGAAGAGTGGGTTTATGTAATCAAACGTGACCGGGATGGTCGTATTTCTTGGCATGCATTTGACCCCACCTACCAAATGTGGCAGCCCCTCCCGCCCATTCCAATGGAGTACAGTGGGGCTCTTGGATTTGGCTGTGCTGTCCTAAGTGGCTGCCACCTGTTCTTATTTGGAGGGAAGGACCCACTTAAGGGTTCTATGAGACGGGTCATTTACTATAGTGCTAGGACAAATAAGTGGCATAGGGCACCCGATATGCTCCGTAAACGACATTTCTTTGGTTCATGTGTCATAAACAACTGCCTTTATGTGGCGGGCGGTGAATGTGAAGGGATTCAGCGGACCCTCCGTTCTGTTGAGGTTTATGACCCGAATAGGAACCGGTGGAGCTTTGTTTCGGATATGAGCACGGCTATGGTGCCATTCATTGGGGTGGTTTATAACGGAAAGTGGTTCCTAAAAGGACTTGGGGCCCACCGGGAGGTCTTGAGTGAAGCCTATATCCCTGAAAGTAATACATGGACATCAGTCAGTGATGGGATGGTTGCCGGTTGGCGTAATCCTAGTATATCTATGGATGGAAAGTTGTACGCTTTGGATTGTCGAGATGGGTGTAAGCTTCGGGTTTATGATGAAGCTACAAGTTCTTGGAGTAGATTTATTGATAGTAGGCTTCATTTAGGGGGTTCTCGGGCTTTAGAGGCTGCAGCTCTTGTACCGCTAAACGGGAAGTTGTGCATTATTCGTAACAACATGAGCCTTAGTTTGGTGGATGTTTCGAGCCCAGATAAACGAGTGGAGACTAATCCTCGGCTTTGGGAAAATATAGCCGGTAGAGGTAACTTCCGGAATATTTTGACAAATTTGTGGTCAAGTATAGCTGGCCGAAATGGACCAAAGAGTCATATTGTGCATTGCCAAGTGCTTCAAGCATGA

Network for GWHGAAZE008362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	56	92	1.30E-05
PF01344.26	Kelch_1	150	190	8.70E-05
PF01344.26	Kelch_1	194	240	2.00E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.236
	SRR3591706	second leaf	7.910
	SRR3591707	mature leaf	10.084
	SRR3591708	Shoot apex	5.815
	SRR3591709	Stem	6.948
	SRR3591710	White floral bud	11.305
	SRR3591711	White flower	12.254
	SRR3591712	Green floral bud	9.943
	SRR3591713	Yellow flower	11.613
SRP173429	SRR8316895	Juvenile bud stage	4.481
	SRR8316896	Juvenile bud stage	4.142
	SRR8316897	Juvenile bud stage	2.070
	SRR8316894	Third green stage	2.585
	SRR8316900	Third green stage	9.206
	SRR8316901	Third green stage	7.852
	SRR8316898	Complete white stage	7.457
	SRR8316899	Complete white stage	13.068
	SRR8316903	Complete white stage	8.592
	SRR8316902	Silver flowering stage	7.146
	SRR8316904	Silver flowering stage	9.692
	SRR8316905	Silver flowering stage	5.838
	SRR8316906	Gold flowering stage	22.347
	SRR8316907	Gold flowering stage	17.655
	SRR8316908	Gold flowering stage	23.723
SRP132670	SRR6706286	Control	6.788
	SRR6706287	Light intensity 50%	8.389
	SRR6706288	Light intensity 20%	8.140
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.460
	CNS0095593	Slightly white alabastrum(diploid) 2	4.247
	CNS0095594	Slightly white alabastrum(diploid) 3	4.762
	CNS0095595	Whole white alabastrum(diploid) 2	3.636
	CNS0095596	Whole white alabastrum(diploid) 3	4.025
	CNS0095597	Whole white alabastrum(diploid) 4	3.947
	CNS0095598	Silvery flower (diploied) 1	5.361
	CNS0095599	Silvery flower (diploied) 2	4.616
	CNS0095600	Silvery flower (diploied) 3	17.350
	CNS0095601	Golden flower (diploid) 1	5.769
	CNS0095602	Golden flower (diploid) 2	19.322
	CNS0095603	Golden flower (diploid) 3	18.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.864
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.587
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.001
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.955
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.892
	CNS0095610	Silvery flower (tetraploid) 1	12.324
	CNS0095611	Silvery flower (tetraploid) 2	16.371
	CNS0095612	Silvery flower (tetraploid) 3	39.184
	CNS0095613	Golden flower (tetraploid) 1	11.572
	CNS0095614	Golden flower (tetraploid) 2	12.514
	CNS0095615	Golden flower (tetraploid) 3	36.030
CRA001975	CRR073297	Stem 1	9.008
	CRR073298	Stem 2	9.450
	CRR073299	Stem 3	9.536
	CRR073300	Leaf 1	9.567
	CRR073301	Leaf 2	7.549
	CRR073302	Leaf 3	8.102
	CRR073303	Juvenile bud 1	9.344
	CRR073304	Juvenile bud 2	9.384
	CRR073305	Juvenile bud 3	10.777
	CRR073306	Third green 1	12.847
	CRR073307	Third green 2	7.862
	CRR073308	Third green 3	8.986
	CRR073309	Second white 1	16.662
	CRR073310	Second white 2	12.993
	CRR073311	Second white 3	13.534
	CRR073312	Silver flowering 1	24.833
	CRR073313	Silver flowering 2	19.711
	CRR073314	Silver flowering 3	18.777
	CRR073315	Gold flowering 1	4.229
	CRR073316	Gold flowering 2	5.866
	CRR073317	Gold flowering 3	5.933
	CRR073318	Tawny withering 1	6.730
	CRR073319	Tawny withering 2	5.273
	CRR073320	Tawny withering 3	6.305