Detail information of GWHGAAZE008363


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP21801.11.7409E-135hypothetical protein JCGZ_00588 [Jatropha curcas]
Swissprottr|P41129|RL132_BRANA6E-12760S ribosomal protein L13-2
trEMBLtr|A0A067JD82|A0A067JD82_JATCU6E-13660S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}
TAIR10AT3G49010.34E-84breast basic conserved 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7174498571746716-
GWHAAZE00000002mRNA7174498571746716-
GWHAAZE00000002exon7174498571745206-
GWHAAZE00000002exon7174541371745571-
GWHAAZE00000002exon7174635771746490-
GWHAAZE00000002exon7174661171746716-
GWHAAZE00000002CDS7174661171746716-
GWHAAZE00000002CDS7174635771746490-
GWHAAZE00000002CDS7174541371745571-
GWHAAZE00000002CDS7174498571745206-
Transcript Sequence

Network for GWHGAAZE008363

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01294.19Ribosomal_L13e61841.40E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02873RP-L13e, RPL13 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf465.440
SRR3591706second leaf209.663
SRR3591707mature leaf85.536
SRR3591708Shoot apex653.563
SRR3591709Stem229.882
SRR3591710White floral bud177.987
SRR3591711White flower188.807
SRR3591712Green floral bud311.723
SRR3591713Yellow flower110.595
SRP173429 SRR8316895Juvenile bud stage 204.139
SRR8316896Juvenile bud stage 273.854
SRR8316897Juvenile bud stage 170.605
SRR8316894Third green stage 117.009
SRR8316900Third green stage 336.586
SRR8316901Third green stage 321.885
SRR8316898Complete white stage 57.156
SRR8316899Complete white stage 263.185
SRR8316903Complete white stage 96.081
SRR8316902Silver flowering stage60.355
SRR8316904Silver flowering stage67.361
SRR8316905Silver flowering stage30.424
SRR8316906Gold flowering stage 85.978
SRR8316907Gold flowering stage 100.070
SRR8316908Gold flowering stage 149.538
SRP132670SRR6706286Control464.133
SRR6706287Light intensity 50%454.706
SRR6706288Light intensity 20%495.963
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1334.035
CNS0095593Slightly white alabastrum(diploid) 2405.258
CNS0095594Slightly white alabastrum(diploid) 3312.585
CNS0095595Whole white alabastrum(diploid) 2288.516
CNS0095596Whole white alabastrum(diploid) 3332.547
CNS0095597Whole white alabastrum(diploid) 4230.247
CNS0095598Silvery flower (diploied) 1200.045
CNS0095599Silvery flower (diploied) 2197.988
CNS0095600Silvery flower (diploied) 3141.794
CNS0095601Golden flower (diploid) 1189.526
CNS0095602Golden flower (diploid) 2144.781
CNS0095603Golden flower (diploid) 3135.841
CNS0095604Slightly white alabastrum(tetraploid) 1322.340
CNS0095605Slightly white alabastrum(tetraploid) 2302.337
CNS0095606Slightly white alabastrum(tetraploid) 3469.678
CNS0095607Whole white alabastrum(tetraploid) 1169.302
CNS0095608Whole white alabastrum(tetraploid) 2141.866
CNS0095609Whole white alabastrum(tetraploid) 3303.509
CNS0095610Silvery flower (tetraploid) 1122.494
CNS0095611Silvery flower (tetraploid) 2122.654
CNS0095612Silvery flower (tetraploid) 388.388
CNS0095613Golden flower (tetraploid) 178.991
CNS0095614Golden flower (tetraploid) 2106.245
CNS0095615Golden flower (tetraploid) 374.115
CRA001975CRR073297Stem 1376.377
CRR073298Stem 2381.552
CRR073299Stem 3391.462
CRR073300Leaf 1321.995
CRR073301Leaf 2390.557
CRR073302Leaf 3413.595
CRR073303Juvenile bud 1343.317
CRR073304Juvenile bud 2228.094
CRR073305Juvenile bud 3265.329
CRR073306Third green 156.440
CRR073307Third green 273.605
CRR073308Third green 367.662
CRR073309Second white 143.441
CRR073310Second white 248.432
CRR073311Second white 322.940
CRR073312Silver flowering 150.673
CRR073313Silver flowering 261.070
CRR073314Silver flowering 347.683
CRR073315Gold flowering 1127.147
CRR073316Gold flowering 2140.677
CRR073317Gold flowering 3107.406
CRR073318Tawny withering 1356.287
CRR073319Tawny withering 2267.936
CRR073320Tawny withering 3374.505