Gene detail

Detail information of GWHGAAZE008376

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651371.1	3.1852E-105	PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
Swissprot	tr\|B9DG24\|TAF7_ARATH	4E-78	Transcription initiation factor TFIID subunit 7
trEMBL	tr\|M5W169\|M5W169_PRUPE	8E-93	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07131.1}
TAIR10	AT1G55300.1	8E-57	TBP-associated factor 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	72609224	72619831	+
GWHAAZE00000002	mRNA	72609224	72619831	+
GWHAAZE00000002	exon	72609224	72609338	+
GWHAAZE00000002	exon	72617362	72617495	+
GWHAAZE00000002	exon	72617885	72618004	+
GWHAAZE00000002	exon	72619194	72619275	+
GWHAAZE00000002	exon	72619674	72619831	+
GWHAAZE00000002	CDS	72609224	72609338	+
GWHAAZE00000002	CDS	72617362	72617495	+
GWHAAZE00000002	CDS	72617885	72618004	+
GWHAAZE00000002	CDS	72619194	72619275	+
GWHAAZE00000002	CDS	72619674	72619831	+

Transcript Sequence
>GWHTAAZE008384 ATGGAGGAGCAATTTATACTCAGAGTTCCGCCCTCTGTTGCTGAGCGGATAGACCAACTGTTGAGCGAGAATGCTTCTTCTTCGGAAGACAAGTCACTGGATTTGTCTTTCTCTGACGATGGAAGGAGCAGCACATTCGTAATAGGGAATGACCAGTTTCCTGCATCCCTCTTGGATCTTCCTTGCATAGTGGAGTCTTACAAAACTTATGATGACAGTGTCCTAATAAAGACTGCAGATATCGGTCAAATGATTATGGTGAGAGAAGAAGCTGATAATGCACCAGATATGGTGGAGTACCGGCATGGACTCACCCCTCCAATGAGGGATGCTCGAAGGCGTAGATTTCGTAGGGAGCTGGATCTAAATCCTGAGCTTGTACGTCGCGTTGAGAAAGATCTGATGAACATCATGTCTGGTGGAACAGCTGAAAATGCCGATATCCTTGCGTTTGCTGAGCAAGAGGAAGGGGGCGAAGGAAATGCTCGTGGTAACGCAAGTAAGAAAGCTGCACCCGCACCTGTGGCCAAGCCTGAGGTGTCAGAGGCTGGAACCAATGCTGGGGAGCCTGAGAGAAGTGATTCTGATGAATCCGATGATTCAATATGA

Network for GWHGAAZE008376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04658.14	TAFII55_N	1	138	2.60E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03132	TAF7	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0005669	cellular_component	transcription factor TFIID complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.370
	SRR3591706	second leaf	11.170
	SRR3591707	mature leaf	10.155
	SRR3591708	Shoot apex	22.561
	SRR3591709	Stem	19.417
	SRR3591710	White floral bud	21.258
	SRR3591711	White flower	27.553
	SRR3591712	Green floral bud	16.816
	SRR3591713	Yellow flower	25.788
SRP173429	SRR8316895	Juvenile bud stage	16.892
	SRR8316896	Juvenile bud stage	21.046
	SRR8316897	Juvenile bud stage	7.714
	SRR8316894	Third green stage	7.576
	SRR8316900	Third green stage	24.724
	SRR8316901	Third green stage	23.665
	SRR8316898	Complete white stage	16.052
	SRR8316899	Complete white stage	33.289
	SRR8316903	Complete white stage	21.330
	SRR8316902	Silver flowering stage	24.753
	SRR8316904	Silver flowering stage	25.252
	SRR8316905	Silver flowering stage	14.821
	SRR8316906	Gold flowering stage	55.382
	SRR8316907	Gold flowering stage	68.275
	SRR8316908	Gold flowering stage	44.109
SRP132670	SRR6706286	Control	32.995
	SRR6706287	Light intensity 50%	28.773
	SRR6706288	Light intensity 20%	30.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.399
	CNS0095593	Slightly white alabastrum(diploid) 2	24.162
	CNS0095594	Slightly white alabastrum(diploid) 3	22.475
	CNS0095595	Whole white alabastrum(diploid) 2	20.503
	CNS0095596	Whole white alabastrum(diploid) 3	20.525
	CNS0095597	Whole white alabastrum(diploid) 4	21.429
	CNS0095598	Silvery flower (diploied) 1	33.196
	CNS0095599	Silvery flower (diploied) 2	22.427
	CNS0095600	Silvery flower (diploied) 3	28.280
	CNS0095601	Golden flower (diploid) 1	27.624
	CNS0095602	Golden flower (diploid) 2	22.886
	CNS0095603	Golden flower (diploid) 3	24.805
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.310
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.047
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.274
	CNS0095610	Silvery flower (tetraploid) 1	20.455
	CNS0095611	Silvery flower (tetraploid) 2	20.229
	CNS0095612	Silvery flower (tetraploid) 3	20.938
	CNS0095613	Golden flower (tetraploid) 1	18.558
	CNS0095614	Golden flower (tetraploid) 2	20.863
	CNS0095615	Golden flower (tetraploid) 3	16.085
CRA001975	CRR073297	Stem 1	24.112
	CRR073298	Stem 2	22.493
	CRR073299	Stem 3	22.398
	CRR073300	Leaf 1	23.379
	CRR073301	Leaf 2	21.566
	CRR073302	Leaf 3	19.459
	CRR073303	Juvenile bud 1	27.326
	CRR073304	Juvenile bud 2	20.037
	CRR073305	Juvenile bud 3	13.500
	CRR073306	Third green 1	24.893
	CRR073307	Third green 2	30.473
	CRR073308	Third green 3	23.074
	CRR073309	Second white 1	27.895
	CRR073310	Second white 2	40.240
	CRR073311	Second white 3	27.008
	CRR073312	Silver flowering 1	28.893
	CRR073313	Silver flowering 2	26.607
	CRR073314	Silver flowering 3	25.278
	CRR073315	Gold flowering 1	33.391
	CRR073316	Gold flowering 2	30.831
	CRR073317	Gold flowering 3	18.437
	CRR073318	Tawny withering 1	29.162
	CRR073319	Tawny withering 2	34.499
	CRR073320	Tawny withering 3	21.668