Detail information of GWHGAAZE008393


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278827.10PREDICTED: transcription factor IIIA-like [Vitis vinifera]
Swissprottr|Q2V3L3|Y4634_ARATH0.0000007Uncharacterized zinc finger protein At4g06634
trEMBLtr|D7TQ66|D7TQ66_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32873.3}
TAIR10AT1G72050.29E-120transcription factor IIIA

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7307770873080706-
GWHAAZE00000002mRNA7307770873080706-
GWHAAZE00000002exon7307770873077896-
GWHAAZE00000002exon7307815273078295-
GWHAAZE00000002exon7307842473078659-
GWHAAZE00000002exon7307881173079105-
GWHAAZE00000002exon7307972773079861-
GWHAAZE00000002exon7308058173080706-
GWHAAZE00000002CDS7308058173080706-
GWHAAZE00000002CDS7307972773079861-
GWHAAZE00000002CDS7307881173079105-
GWHAAZE00000002CDS7307842473078659-
GWHAAZE00000002CDS7307815273078295-
GWHAAZE00000002CDS7307770873077896-
Transcript Sequence

Network for GWHGAAZE008393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.27zf-C2H263849.00E-05
PF00096.27zf-C2H21611850.00013
PF00096.27zf-C2H22522765.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.872
SRR3591706second leaf10.606
SRR3591707mature leaf8.217
SRR3591708Shoot apex16.463
SRR3591709Stem12.128
SRR3591710White floral bud13.809
SRR3591711White flower16.427
SRR3591712Green floral bud11.382
SRR3591713Yellow flower14.759
SRP173429 SRR8316895Juvenile bud stage 5.472
SRR8316896Juvenile bud stage 9.266
SRR8316897Juvenile bud stage 4.529
SRR8316894Third green stage 4.412
SRR8316900Third green stage 9.976
SRR8316901Third green stage 13.892
SRR8316898Complete white stage 5.594
SRR8316899Complete white stage 20.827
SRR8316903Complete white stage 9.325
SRR8316902Silver flowering stage6.079
SRR8316904Silver flowering stage8.776
SRR8316905Silver flowering stage3.343
SRR8316906Gold flowering stage 13.209
SRR8316907Gold flowering stage 13.928
SRR8316908Gold flowering stage 12.076
SRP132670SRR6706286Control14.789
SRR6706287Light intensity 50%14.960
SRR6706288Light intensity 20%15.773
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.981
CNS0095593Slightly white alabastrum(diploid) 213.260
CNS0095594Slightly white alabastrum(diploid) 312.341
CNS0095595Whole white alabastrum(diploid) 27.936
CNS0095596Whole white alabastrum(diploid) 38.175
CNS0095597Whole white alabastrum(diploid) 46.880
CNS0095598Silvery flower (diploied) 111.986
CNS0095599Silvery flower (diploied) 26.426
CNS0095600Silvery flower (diploied) 39.560
CNS0095601Golden flower (diploid) 16.335
CNS0095602Golden flower (diploid) 210.074
CNS0095603Golden flower (diploid) 39.634
CNS0095604Slightly white alabastrum(tetraploid) 112.213
CNS0095605Slightly white alabastrum(tetraploid) 29.335
CNS0095606Slightly white alabastrum(tetraploid) 316.957
CNS0095607Whole white alabastrum(tetraploid) 18.553
CNS0095608Whole white alabastrum(tetraploid) 25.250
CNS0095609Whole white alabastrum(tetraploid) 311.655
CNS0095610Silvery flower (tetraploid) 111.649
CNS0095611Silvery flower (tetraploid) 211.075
CNS0095612Silvery flower (tetraploid) 38.992
CNS0095613Golden flower (tetraploid) 19.416
CNS0095614Golden flower (tetraploid) 210.397
CNS0095615Golden flower (tetraploid) 314.193
CRA001975CRR073297Stem 118.445
CRR073298Stem 211.990
CRR073299Stem 310.823
CRR073300Leaf 112.112
CRR073301Leaf 213.124
CRR073302Leaf 311.416
CRR073303Juvenile bud 15.005
CRR073304Juvenile bud 22.908
CRR073305Juvenile bud 34.648
CRR073306Third green 12.130
CRR073307Third green 21.686
CRR073308Third green 31.662
CRR073309Second white 10.542
CRR073310Second white 22.910
CRR073311Second white 32.676
CRR073312Silver flowering 12.149
CRR073313Silver flowering 21.398
CRR073314Silver flowering 31.127
CRR073315Gold flowering 13.605
CRR073316Gold flowering 29.216
CRR073317Gold flowering 32.279
CRR073318Tawny withering 111.418
CRR073319Tawny withering 213.171
CRR073320Tawny withering 314.770