Gene detail

Detail information of GWHGAAZE008435

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009590288.1	PREDICTED: oligopeptide transporter 3 [Nicotiana tomentosiformis]
Swissprot	tr\|O23482\|OPT3_ARATH	Oligopeptide transporter 3
trEMBL	tr\|A0A068U7N1\|A0A068U7N1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04526.1}
TAIR10	AT4G16370.1	oligopeptide transporter

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	75259290	75265848	+
GWHAAZE00000002	mRNA	75259290	75265848	+
GWHAAZE00000002	exon	75259290	75259772	+
GWHAAZE00000002	exon	75260629	75260726	+
GWHAAZE00000002	exon	75263861	75264430	+
GWHAAZE00000002	exon	75264591	75264846	+
GWHAAZE00000002	exon	75264954	75265136	+
GWHAAZE00000002	exon	75265231	75265848	+
GWHAAZE00000002	CDS	75259290	75259772	+
GWHAAZE00000002	CDS	75260629	75260726	+
GWHAAZE00000002	CDS	75263861	75264430	+
GWHAAZE00000002	CDS	75264591	75264846	+
GWHAAZE00000002	CDS	75264954	75265136	+
GWHAAZE00000002	CDS	75265231	75265848	+

Transcript Sequence
>GWHTAAZE008443 ATGGCGTCCAAATACGACCCCCAGGAGCAGCCATTGCCGGAGGAGGAAAGCTGTGCAGTGGAGGAAGTGGCATTGGTTGTGCCGGAAACCGACGACCCATCTCTACCGGTGATGACATTTAGGGCCTGGTTTCTAGGCCTAACCTCCTGCGTCATCCTCATTTTCGTCAACACCTTCTTCAAATTTCGGACTCAACCCTTGACTATATCTGCTGTTATTATGCAAATTTCCGTTTTGCCCATCGGAAAATTCATGGCTGCGACCCTCCCGGACAGGGAGTACAGTGTATTGGGTTGTAGCTTCAGCTTGAATCCAGGGCCCTTCAACATCAAGGAGCATGTCATCATAACAGTGTTCGCCAATTGTGGAGTTTCAATCGGAGGGGGTGATGCCTACACTATTGGGGCCATTATTGTAATGAAGGCTTACTATAAGCAGACCCTCAATTCCCTCTGCGCCATCCTTCTCGTCGGCACCACTCAGGTGTTGGGGTACGGATGGGCTGGGATGTTCAGGAGGTACCTGGTTGATCCCGTTGAGATGTGGTGGCCTGCTAACCTTACTCAGGTTTCACTTTTTAGAGCACTGCACGAGAAGGAACCCAAGACAAAAGGCATGACCCGGATGCAATTTTTCCTGGCCTTCCTCGCCGCAAGCTTCGCATATTACACATTTCCTGGCTATCTTTTCCCCACTCTGACATTCTTTTCGTGGGTATGTTGGTTGTGGCCTCATAGTATCACCGCTCAGCAAATTGGTTCCGGTTACCATGGGCTTGGGGTGGGTGCCTTTACCCTCGATTGGGCTGGAATTTCAGCCTACCGCGGAAGCCCATTGGTGACACCCTGGTCTTCCATTCTCAATGTTGGGATCGGTTTTATCATGTTTATCTACATAATCGTTCCTCTTTGTTACTGGAAATACAACACTTTTGATGCAAGAAAATTCCCCATATTCTCCAACCAGCTCTTCATTACTACCGGGCAGAAATATGACACAACCAAGATCCTGACCCCACAGTTTGATCTTAACACCACTGCTTATGACAGTTATGGCAAGCTCTATCTTAGCCCTCTCTTTGCACTTTCCATCGGATCAGGATTCGCAAGATTTACAGCAACCCTGGTGCATGTGGCACTCTTTCATGGCAGAGATATTTGGAAGCAGAGCAGAACTGCAGTAAAGAATGTCAAATTGGATGTCCATGCAAAATTGATGAGAAGTTACAAGGAAGTGCCTCAATGGTGGTTCCTTATATTATTGTTTGGGAGCATTGCCCTATCCCTTTTAATGTCTTTTGTGTGGAAGGAAGATGTACAGCTGCAATGGTGGGGAATGCTCTTTGCATTTGGTTTAGCTTGGCTCGTTACCCTCCCCATTGGAATCATTCAGGCAACTACCAACCAGCAACCCGGATATAACATAGTTGCGCAGTTCATAATTGGTTATGTCCTACCCGGAAAACCCATAGCAAATTTGCTTTTCAAGATCTATGGGCGAATGAGTACCATTCAAGCTCTCTCTTTCTTATCTGACCTTAAACTTGGTCACTATATGAAAATTCCACCTCGTTGCATGTTCAAAGCTCAGCTGGTGGGAACTCTAGTTTCTGGAACAGTCAGCCTTGCAATTTCGTGGTGGATGTTGGAGAGCATTGATAACCTGTGTGATGTGGAAGCCTTACATCCAGAGAGCCCATGGACATGCCCTAAATTTCGAGTCACCTTTGATGCATCTGTCATATGGGGCCTAATTGGACCAGAGCGACTATTTGGACCTGGAGGGTTGTATAGGAACTTGGTCTGGTTATTCCTCATTGGAGCTGTCTTGCCCGTACCTGTTTGGGTGCTTAGCAAAATGTACCCAGAAAAGAAGTGGATCCCCTTGATTAACATACCCGTAATTTCCTATGGCTTTGCTGGAATGCCGCCGGCAACACCCACCAATATAGCTAGTTGGCTTATCACGGGAACCATCTTCAACTATTTTATATTCAAGTACAGGAAAGGATGGTGGCAAAAATATAACTATGTTCTGTCTGCAGCTCTGGATGCTGGAACGGCTTTCATGGGGGTTCTACTGTTTTTTGCGTTGCAGAACGAGGATGTATTTATCAAATGGTGGGGATCAGAGCCTGACCACTGTCCTTTGGCATCTTGTCCTACAGAACCTGGCATTGCAGTTAAAGGATGTCCAGTTTTCACATAA

Network for GWHGAAZE008435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0168

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03169.16	OPT	38	697	1.60E-169

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.024
	SRR3591706	second leaf	0.016
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.029
	SRR3591711	White flower	0.150
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.059
	SRR8316896	Juvenile bud stage	0.056
	SRR8316897	Juvenile bud stage	0.038
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.020
	SRR8316901	Third green stage	0.035
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.030
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.016
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.031
	SRR6706288	Light intensity 20%	0.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.013
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.257
	CNS0095599	Silvery flower (diploied) 2	0.636
	CNS0095600	Silvery flower (diploied) 3	0.011
	CNS0095601	Golden flower (diploid) 1	0.230
	CNS0095602	Golden flower (diploid) 2	0.066
	CNS0095603	Golden flower (diploid) 3	0.069
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.007
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.023
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.006
	CRR073298	Stem 2	0.037
	CRR073299	Stem 3	0.006
	CRR073300	Leaf 1	0.002
	CRR073301	Leaf 2	0.014
	CRR073302	Leaf 3	0.003
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.022
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.011
	CRR073316	Gold flowering 2	0.010
	CRR073317	Gold flowering 3	0.047
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.010
	CRR073320	Tawny withering 3	0.000