Gene detail

Detail information of GWHGAAZE008453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI16537.3	2.4082E-167	unnamed protein product [Vitis vinifera]
Swissprot	tr\|F4I096\|MED13_ARATH	2E-145	Mediator of RNA polymerase II transcription subunit 13
trEMBL	tr\|F6GUN3\|F6GUN3_VITVI	4E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43810.1}
TAIR10	AT1G55325.1	1E-129	RNA polymerase II transcription mediators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	76278439	76287822	+
GWHAAZE00000002	mRNA	76278439	76287822	+
GWHAAZE00000002	exon	76278439	76278512	+
GWHAAZE00000002	exon	76280564	76280742	+
GWHAAZE00000002	exon	76280798	76280884	+
GWHAAZE00000002	exon	76280995	76281082	+
GWHAAZE00000002	exon	76281174	76281257	+
GWHAAZE00000002	exon	76283870	76283947	+
GWHAAZE00000002	exon	76284069	76284148	+
GWHAAZE00000002	exon	76284949	76285065	+
GWHAAZE00000002	exon	76286306	76286384	+
GWHAAZE00000002	exon	76286532	76286851	+
GWHAAZE00000002	exon	76287161	76287220	+
GWHAAZE00000002	exon	76287543	76287555	+
GWHAAZE00000002	exon	76287672	76287822	+
GWHAAZE00000002	CDS	76278439	76278512	+
GWHAAZE00000002	CDS	76280564	76280742	+
GWHAAZE00000002	CDS	76280798	76280884	+
GWHAAZE00000002	CDS	76280995	76281082	+
GWHAAZE00000002	CDS	76281174	76281257	+
GWHAAZE00000002	CDS	76283870	76283947	+
GWHAAZE00000002	CDS	76284069	76284148	+
GWHAAZE00000002	CDS	76284949	76285065	+
GWHAAZE00000002	CDS	76286306	76286384	+
GWHAAZE00000002	CDS	76286532	76286851	+
GWHAAZE00000002	CDS	76287161	76287220	+
GWHAAZE00000002	CDS	76287543	76287555	+
GWHAAZE00000002	CDS	76287672	76287822	+

Transcript Sequence
>GWHTAAZE008461 GGAGGTCTACATCAGGTGTCGTGGTTCCAATTTCTCCCTCATGAAGCTGATGTCAACTCTCTGCCTGATAGAAGTCTTGCTATTTTGGTTAGTGTGAAAGTGGATCAGAAGGATGCTGCGACACTGCTGGTGCTTTCATCCCACCTGCAGTTGCAGAAGGAAGGATTTCTCAGCACATGGACCAACTCTTTTGTTGGACCATGGGACCCATCTCAAGGTCTACACAACCCTGGTAAGAATTTTAAGCATTCAGATGAGAAGATCAAGCTCTGGCTGTTTCTTCCTGGGCGTCATTCATCGGTTGTCGAGAAAGCTCAGCTTGCTGTATCTAGATTAAGAGTTCTTGCATCTGGACTCTGGTTGGCTCCGGGGGACTCAGAAGAGGTTGCAACTGCTCTATCTCAGGCTCTAAAGAATTGTATAGAAAGGTCACTTTTGGGATTTTCATATATGAGATTTGGAGATGTATTTTCAAGATACAATCCGTTTTCCCAGAGTGAAGCACTTTTCAGGAGGGGCCAGCCAGTGGTTGAGTTCATATTTGCCGCCACTGAAGAGGCAGTCTTTGTGCATGTCATAATATCAGCGAAGCATGTTCGAGCCCTTTCAAGTGGAGATATGGAAATGATATCAAAACATTCTTCTACTAGTTCTGGCAACAGGCTTCCAGTTATTCTTGAGTCTGGTCCAAAACTGAAAGGTTTGGCCAAATGCAATGGGCTACTTGCCCATTTTAGATCTTTGTCTGTGATGGTGGGCCTGGGACCTTCAAATGGGGTCTCCACAGTTGTTGTTTCACCTCACGGAATGCGTGGTAGTCTCTCTGGATGTTGTCCAGGCGATCTTGTGAAGCAAGTGTATTTCAGCTCTGGCAAGGTTAGGGCTTCAAATGGGATCATAGGTCTACCACACCAGGTTTCTCAACGTTCCAGTTGCCAGCTAAGGGGGCAAAATTGCTATCTTGAAGTTACCCTTGGATGTGCTAGTGTTGAAAATGACAAAACCTCCATTACAAATAAGAACAATCTCAAGCATCATCTAGCTGAATCTCCTGCAACTGCAAGAGATGTTCAAAAGGGATCAGCAGATCAAATTTCAGTTTATGAAAGAACATTTATCTATCCACCTGAAGCAGTGCTTGTCCCGGTTGTGCAAACATCATTTTCTAGATCTTCTTTGAAAAGGTATTCTGGCTACAAAATTGGATGGGACCATCATTATCGGGTTCATCCATCTTTATGCATTGCAGTGACGGCAAGCGACAGTGATTACAAGATGAACACAGGAGGAACTGGTGATCTCGAGGCAGATGCCGATTCTTTAACATGTCGACAGTCTGGTTTATCATCTGCTGATCAGTTTCACAATGGTGGTCTCAAGATGGTATTACCTTTTCATTTATTCGTATGA

Network for GWHGAAZE008453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11597.9	Med13_N	1	226	4.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15164	MED13	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.381
	SRR3591706	second leaf	6.338
	SRR3591707	mature leaf	7.539
	SRR3591708	Shoot apex	5.298
	SRR3591709	Stem	8.947
	SRR3591710	White floral bud	14.754
	SRR3591711	White flower	16.975
	SRR3591712	Green floral bud	11.141
	SRR3591713	Yellow flower	11.024
SRP173429	SRR8316895	Juvenile bud stage	5.038
	SRR8316896	Juvenile bud stage	4.444
	SRR8316897	Juvenile bud stage	2.456
	SRR8316894	Third green stage	2.737
	SRR8316900	Third green stage	4.072
	SRR8316901	Third green stage	5.131
	SRR8316898	Complete white stage	1.369
	SRR8316899	Complete white stage	5.745
	SRR8316903	Complete white stage	4.443
	SRR8316902	Silver flowering stage	2.010
	SRR8316904	Silver flowering stage	4.774
	SRR8316905	Silver flowering stage	1.843
	SRR8316906	Gold flowering stage	6.609
	SRR8316907	Gold flowering stage	6.193
	SRR8316908	Gold flowering stage	6.286
SRP132670	SRR6706286	Control	6.662
	SRR6706287	Light intensity 50%	7.545
	SRR6706288	Light intensity 20%	7.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.550
	CNS0095593	Slightly white alabastrum(diploid) 2	0.330
	CNS0095594	Slightly white alabastrum(diploid) 3	1.243
	CNS0095595	Whole white alabastrum(diploid) 2	0.729
	CNS0095596	Whole white alabastrum(diploid) 3	0.286
	CNS0095597	Whole white alabastrum(diploid) 4	0.778
	CNS0095598	Silvery flower (diploied) 1	2.925
	CNS0095599	Silvery flower (diploied) 2	1.389
	CNS0095600	Silvery flower (diploied) 3	8.034
	CNS0095601	Golden flower (diploid) 1	2.869
	CNS0095602	Golden flower (diploid) 2	10.001
	CNS0095603	Golden flower (diploid) 3	9.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.585
	CNS0095610	Silvery flower (tetraploid) 1	7.854
	CNS0095611	Silvery flower (tetraploid) 2	8.418
	CNS0095612	Silvery flower (tetraploid) 3	5.506
	CNS0095613	Golden flower (tetraploid) 1	1.617
	CNS0095614	Golden flower (tetraploid) 2	4.249
	CNS0095615	Golden flower (tetraploid) 3	10.383
CRA001975	CRR073297	Stem 1	6.298
	CRR073298	Stem 2	5.681
	CRR073299	Stem 3	5.060
	CRR073300	Leaf 1	6.155
	CRR073301	Leaf 2	4.780
	CRR073302	Leaf 3	4.260
	CRR073303	Juvenile bud 1	3.966
	CRR073304	Juvenile bud 2	3.279
	CRR073305	Juvenile bud 3	6.479
	CRR073306	Third green 1	1.975
	CRR073307	Third green 2	1.140
	CRR073308	Third green 3	3.149
	CRR073309	Second white 1	1.648
	CRR073310	Second white 2	3.281
	CRR073311	Second white 3	4.524
	CRR073312	Silver flowering 1	4.270
	CRR073313	Silver flowering 2	5.073
	CRR073314	Silver flowering 3	3.500
	CRR073315	Gold flowering 1	1.769
	CRR073316	Gold flowering 2	6.443
	CRR073317	Gold flowering 3	5.132
	CRR073318	Tawny withering 1	1.762
	CRR073319	Tawny withering 2	1.526
	CRR073320	Tawny withering 3	1.236