Detail information of GWHGAAZE008462


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACX83569.10DNA methyltransferase [Hieracium piloselloides]
Swissprottr|B1Q3J6|DNM1B_ORYSJ0DNA (cytosine-5)-methyltransferase 1B
trEMBLtr|D0V1M8|D0V1M8_HIEPI0Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}
TAIR10AT4G13610.10DNA (cytosine-5-)-methyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7658468376593603-
GWHAAZE00000002mRNA7658468376593603-
GWHAAZE00000002exon7658468376584811-
GWHAAZE00000002exon7658604576586263-
GWHAAZE00000002exon7658702376587184-
GWHAAZE00000002exon7658727976587557-
GWHAAZE00000002exon7658842076588617-
GWHAAZE00000002exon7658873076588877-
GWHAAZE00000002exon7658930776589418-
GWHAAZE00000002exon7658949876589702-
GWHAAZE00000002exon7658980676589970-
GWHAAZE00000002exon7659014376591649-
GWHAAZE00000002exon7659213876593603-
GWHAAZE00000002CDS7659213876593603-
GWHAAZE00000002CDS7659014376591649-
GWHAAZE00000002CDS7658980676589970-
GWHAAZE00000002CDS7658949876589702-
GWHAAZE00000002CDS7658930776589418-
GWHAAZE00000002CDS7658873076588877-
GWHAAZE00000002CDS7658842076588617-
GWHAAZE00000002CDS7658727976587557-
GWHAAZE00000002CDS7658702376587184-
GWHAAZE00000002CDS7658604576586263-
GWHAAZE00000002CDS7658468376584811-
Transcript Sequence

Network for GWHGAAZE008462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12047.9DNMT1-RFD932244.20E-34
PF12047.9DNMT1-RFD3915406.90E-37
PF01426.19BAH7348642.80E-14
PF01426.19BAH90810466.20E-23
PF00145.18DNA_methylase109715239.80E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00558DNMT1, dcm Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0090116biological_processC-5 methylation of cytosine
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0003682molecular_functionchromatin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.716
SRR3591706second leaf6.074
SRR3591707mature leaf3.727
SRR3591708Shoot apex25.367
SRR3591709Stem8.291
SRR3591710White floral bud4.774
SRR3591711White flower3.138
SRR3591712Green floral bud6.168
SRR3591713Yellow flower1.497
SRP173429 SRR8316895Juvenile bud stage 6.901
SRR8316896Juvenile bud stage 8.820
SRR8316897Juvenile bud stage 3.948
SRR8316894Third green stage 3.949
SRR8316900Third green stage 7.553
SRR8316901Third green stage 7.056
SRR8316898Complete white stage 0.873
SRR8316899Complete white stage 5.527
SRR8316903Complete white stage 2.109
SRR8316902Silver flowering stage0.782
SRR8316904Silver flowering stage1.545
SRR8316905Silver flowering stage0.413
SRR8316906Gold flowering stage 1.428
SRR8316907Gold flowering stage 1.629
SRR8316908Gold flowering stage 1.503
SRP132670SRR6706286Control3.541
SRR6706287Light intensity 50%3.562
SRR6706288Light intensity 20%4.281
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.524
CNS0095593Slightly white alabastrum(diploid) 26.105
CNS0095594Slightly white alabastrum(diploid) 36.157
CNS0095595Whole white alabastrum(diploid) 25.855
CNS0095596Whole white alabastrum(diploid) 38.228
CNS0095597Whole white alabastrum(diploid) 46.543
CNS0095598Silvery flower (diploied) 14.334
CNS0095599Silvery flower (diploied) 25.295
CNS0095600Silvery flower (diploied) 33.771
CNS0095601Golden flower (diploid) 13.275
CNS0095602Golden flower (diploid) 23.301
CNS0095603Golden flower (diploid) 33.741
CNS0095604Slightly white alabastrum(tetraploid) 19.394
CNS0095605Slightly white alabastrum(tetraploid) 28.443
CNS0095606Slightly white alabastrum(tetraploid) 311.784
CNS0095607Whole white alabastrum(tetraploid) 18.211
CNS0095608Whole white alabastrum(tetraploid) 26.935
CNS0095609Whole white alabastrum(tetraploid) 38.354
CNS0095610Silvery flower (tetraploid) 12.695
CNS0095611Silvery flower (tetraploid) 22.831
CNS0095612Silvery flower (tetraploid) 33.592
CNS0095613Golden flower (tetraploid) 11.002
CNS0095614Golden flower (tetraploid) 22.137
CNS0095615Golden flower (tetraploid) 30.889
CRA001975CRR073297Stem 19.155
CRR073298Stem 27.724
CRR073299Stem 35.980
CRR073300Leaf 15.217
CRR073301Leaf 25.188
CRR073302Leaf 32.850
CRR073303Juvenile bud 13.759
CRR073304Juvenile bud 21.520
CRR073305Juvenile bud 33.832
CRR073306Third green 11.427
CRR073307Third green 21.103
CRR073308Third green 31.229
CRR073309Second white 11.021
CRR073310Second white 21.168
CRR073311Second white 30.604
CRR073312Silver flowering 11.168
CRR073313Silver flowering 20.474
CRR073314Silver flowering 30.568
CRR073315Gold flowering 12.467
CRR073316Gold flowering 23.179
CRR073317Gold flowering 31.630
CRR073318Tawny withering 17.621
CRR073319Tawny withering 24.821
CRR073320Tawny withering 35.780