Gene detail

Detail information of GWHGAAZE008469

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011048159.1	0	PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
Swissprot	tr\|Q9MAP5\|SBT33_ARATH	1E-169	Subtilisin-like protease SBT3.3 {ECO:0000303\|PubMed:16193095} (Precursor)
trEMBL	tr\|A0A061GYM5\|A0A061GYM5_THECC	0	Subtilisin-like serine endopeptidase family protein {ECO:0000313\|EMBL:EOY32239.1}
TAIR10	AT4G26330.1	0	Subtilisin-like serine endopeptidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	76965655	76979013	-
GWHAAZE00000002	mRNA	76965655	76979013	-
GWHAAZE00000002	exon	76978894	76979013	-
GWHAAZE00000002	exon	76978060	76978151	-
GWHAAZE00000002	exon	76977487	76977584	-
GWHAAZE00000002	exon	76977131	76977298	-
GWHAAZE00000002	exon	76976087	76976754	-
GWHAAZE00000002	exon	76975104	76975171	-
GWHAAZE00000002	exon	76970716	76970955	-
GWHAAZE00000002	exon	76969435	76969549	-
GWHAAZE00000002	exon	76967511	76967727	-
GWHAAZE00000002	exon	76965655	76966265	-
GWHAAZE00000002	CDS	76978894	76979013	-
GWHAAZE00000002	CDS	76978060	76978151	-
GWHAAZE00000002	CDS	76977487	76977584	-
GWHAAZE00000002	CDS	76977131	76977298	-
GWHAAZE00000002	CDS	76976087	76976754	-
GWHAAZE00000002	CDS	76975104	76975171	-
GWHAAZE00000002	CDS	76970716	76970955	-
GWHAAZE00000002	CDS	76969435	76969549	-
GWHAAZE00000002	CDS	76967511	76967727	-
GWHAAZE00000002	CDS	76965655	76966265	-

Transcript Sequence
>GWHTAAZE008477 ATGCAGCTATTAATCATCCTCAATTATACGGTTAAAGAATTGGCTAAAAAGGTTATCAAACTTCTTTGTTTCTTTCTTTGTGATAAGAATGATGAGGAGCACATGTACTTATCTAAAGAGGTTTACATAGTCTATTTAGGGCTAAAAAATGTCCATGATCCTCTCCTCACTTCAAAGCAACATATTGACCTCCTTTCTAATGTCTATGCCAGCAAAGAGGATGCGGAGGAATCAATGCTATATAGCTACAAGCATAGCTTCTCTGGGTTTTCCGCAATGCTTAACTCAAGCCAAGCAACCACCCTAGCAAGAATGAAAGGAGTGATATCAGTGTTCAAGAGTAGAACACAGGTTTTGGACACAACAAGAAGCTGGGATTTCATGGGTCTGAGCTTGGACTACACTACAAAGGCTACAGCCATTCATCCACCTCAACTAGCTTATGGAAGTGATGTAATTGTTGGGATTTTTGACTCAGGTATTTGGCCAAATTCTTCTAGTTTCCAAGAAGAGCCAGGCACTGGCCCTATTCCAAGATCATGGAAAGGAAAATGCGTATCCGGGGAAAAATTTGATCCAATAAAATCATGCAACCGCAAACTTATTGGTGCGCAGTACTACACAAAAGGCATAGAGAAAAAATACGGTCCTATAAACGCCACGTCCGAATACCGGTCTCCGCTTGACTTCCTTGGTCACGGGACCCACACGGCTTCCACAGCTGTCGGATCGGTTGTGAAAAACGCGAGCTTCTTTGGCTTCGGCCAGGGCACCGCCAGGGGTGGAGCCCCCAGAGCTAGGCTTGCAGTGTACAAAGTTTGTTGGAGCGATAAAAACTTTAACGGAAGGTGCACTGATGCAGATATAATGGCGGCTTTTGACGATGCGTTGCATGACGGTGTCAATGTTATATCGGCTTCTTTCGGCCCTCCTGTACCATTGATTCCGTTTTTCGAATCAACTGGTGATATCGTTTCCTTTCATGCCATGCAACTCGGCGTGAGTGTGGTGTTTTCGGCGGGTAATGATGGTCCCGACCCATCTTTGTTGCGGAACGTTAATCCGTGGAGCATTTGTGTAGCTGCTTCTACGATCGATCGGACATTTCCAACACAAATTCTTCTGGATAATAATCTCTCTTTCATGGGTGAAGCCTTAATTACTAAACCACTAAGCGGAAAATTGGTGGGGCCCACTCCTTATTTCATCGGAGGGGTGTGTACTCCAGGAAATTGGAGAAACACAACAGCAAAAGGAAGTGCTTTGTGCTTGTCTACGGTGGGACCCGTAACCAGCGGCGAGGCAGAACTGGCGGCGCGTAAGGCCAACGCCTTGGCCTTGATATTTGTGGAGCCTCTCACGCGCCAAATTGCTGACGTGGATATCATCCCCACGGTCCGCGTTGATTTCATTCAAGGCACCAAAATTGCTAACTATCTTGCTGATTCGTACTTTACACCAAAAGTGCAGATATCAGCGAGTAGGACAGCTATCATGGAGTCACCAGCTCCTATGGTTGCTTATTTTTCTTCCAGAGGCCCAAGCACACTCTCACCTGATATTCTCAAGCCAGATATAACTGCTCCTGGGGTAAACATATTAGCAGCATGGCCGCCCAAAACTCCTCCAACATTGTTACCTTATGACATCGACCGCTCTACCAATTGGAATTTTCAGTCCGGGACGTCAATGTCTTGCCCTCATGTGACCGGCGTGGTTGCCCTCGTCAAATCCGCGCACCCCAACTGGTCTCCTGCCGCGATCAAGTCTGCACTCATGACCACAGCTTACAATGAAGATGACAGCCATGACAGTATTCTTGCCGGTGGGTCAATGAAAGTGTCCGATCCCTTCGACATTGGTTCCGGTCACATTGATCCATTAAAAGCACTTGATCCGGGCCTAGTTTATGACCTCAAGACTAGTGACTACATTCTATATCTTTGTAATTGTGGCTACACTCAAGATCAAATCAGCCATATGGTCCTAGATCTCGGTCCGAGTACTGATTGGACAAGTTTCCCAAGAGGACACACTATCAACACGAATATTAACTACCCTTCCATAATGATCTCCAATCTCCAATCGACAACTACGGTTAAGAGGACTGTTCGAAACGTGGGTCATAAGAAAACAGCTCTGTATTTTTCTAAGGTGGCGAGTCCTAATGGTGTGGAAGTGGTTGTTTGGCCTCGGGTTCTAGTTTTTACATGCTTTAGAGAAGAAGTTTCTTATTTTGTGACTTTTAAACCGATGAAGTGTTCGGAAGGGAGATTTGATTTTGGTGAGATTGTTTGGTCGGATGGGTTCCATTTCGTTAGAAGTCCGTTGGTTGTGTTTGTCAACACGACTAACGCTGCTCTTGCTTGGGATAGCACTGCTTCTATGGCTAGCTAA

Network for GWHGAAZE008469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0196

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05922.17	Inhibitor_I9	41	115	4.20E-12
PF00082.23	Peptidase_S8	149	600	6.90E-42
PF17766.2	fn3_6	683	779	2.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.463
	SRR3591706	second leaf	0.175
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.171
	SRR3591709	Stem	0.186
	SRR3591710	White floral bud	0.621
	SRR3591711	White flower	0.139
	SRR3591712	Green floral bud	1.061
	SRR3591713	Yellow flower	0.026
SRP173429	SRR8316895	Juvenile bud stage	0.452
	SRR8316896	Juvenile bud stage	0.631
	SRR8316897	Juvenile bud stage	0.411
	SRR8316894	Third green stage	0.242
	SRR8316900	Third green stage	0.597
	SRR8316901	Third green stage	0.650
	SRR8316898	Complete white stage	0.027
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.027
	SRR8316902	Silver flowering stage	0.037
	SRR8316904	Silver flowering stage	0.067
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.010
	SRR8316907	Gold flowering stage	0.072
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.193
	SRR6706287	Light intensity 50%	0.144
	SRR6706288	Light intensity 20%	0.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.299
	CNS0095593	Slightly white alabastrum(diploid) 2	0.732
	CNS0095594	Slightly white alabastrum(diploid) 3	0.576
	CNS0095595	Whole white alabastrum(diploid) 2	0.269
	CNS0095596	Whole white alabastrum(diploid) 3	0.252
	CNS0095597	Whole white alabastrum(diploid) 4	0.238
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.066
	CNS0095601	Golden flower (diploid) 1	0.072
	CNS0095602	Golden flower (diploid) 2	0.016
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.459
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.270
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.520
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.107
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.475
	CRR073298	Stem 2	0.548
	CRR073299	Stem 3	1.025
	CRR073300	Leaf 1	0.222
	CRR073301	Leaf 2	0.256
	CRR073302	Leaf 3	0.652
	CRR073303	Juvenile bud 1	0.049
	CRR073304	Juvenile bud 2	0.168
	CRR073305	Juvenile bud 3	0.071
	CRR073306	Third green 1	0.086
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.111
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.022
	CRR073312	Silver flowering 1	0.064
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.021
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.524
	CRR073319	Tawny withering 2	0.293
	CRR073320	Tawny withering 3	0.387